Gene omics information

Query gene ID	Contig19027_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig19027_at	Contig19027	-	-	1e+0	At5g05290	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	S.X.	H.G.	Please select
0.73	88.7	Contig11674_at	Contig11674	-	-	3e-1	At5g49420	MADS-box protein (AGL84)	S.X.	H.G.	Please select
0.56	74.3	Contig20382_at	Contig20382	-	-	4e-1	At1g53910	RAP2.12	S.X.	H.G.	Please select
0.55	72.0	Contig15852_at	Contig15852	-	-	1e-33	At1g29940	NRPA2	S.X.	H.G.	Please select
0.50	66.9	Contig18946_at	Contig18946	-	-	1e+0	At5g65220	ribosomal protein L29 family protein	S.X.	H.G.	Please select
0.42	55.2	Contig16664_at	Contig16664	-	-	3e-8	At1g73180	eukaryotic translation initiation factor-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.0	99.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
21.1	99.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
19.3	99.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
16.0	99.6	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.1	99.1	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.3	98.5	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.3	98.5	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.1	98.4	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.9	98.3	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.9	98.3	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	9e-25	113	Contig18085_at	Contig18085	-	-	4e-11	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.02	7e-1	34	Contig8830_at	Contig8830	-	-	1e-1	At2g27390	proline-rich family protein	C.G.	S.X.	Please select
0.03	7e-1	34	Contig17814_at	Contig17814	-	-	1e-25	At3g01300	protein kinase, putative	C.G.	S.X.	Please select
0.01	3e+0	32	Contig5833_s_at	Contig5833	-	-	3e-4	At2g17370	HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig5833_at	Contig5833	-	-	3e-4	At2g17370	HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig6473_at	Contig6473	-	-	3e-4	At3g16480	MPPalpha (mitochondrial processing peptidase alpha subunit)	C.G.	S.X.	Please select
0.03	3e+0	32	HT13I08r_at	HT13I08r	-	-	3e+0	At1g57790	F-box family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig5896_at	Contig5896	-	-	3e-5	At3g02770	dimethylmenaquinone methyltransferase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig5885_at	Contig5885	-	-	3e+0	At4g02465	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At5g05290	830411	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-9	63	Glycine max	GmaAffx.83668.1.S1_at	AW780837	-	-	3e-21	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.22	7e-115	414	Oryza sativa	Os.32417.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	8e-3	42	Populus trichocarpa	PtpAffx.45124.1.S1_at	AJ774654	hypothetical protein	-	5e-13	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.81	0	837	Triticum aestivum	Ta.11587.1.S1_at	BQ170404	-	-	2e+0	At1g75630	AVA-P4	C.G.	S.X.	Please select
0.04	2e-3	42	Vitis vinifera	1616710_at	CF515503	hypothetical protein LOC100248331	-	2e-8	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.45	6e-69	260	Zea mays	Zm.6241.1.A1_at	BQ487255	hypothetical protein LOC100274594	-	3e-1	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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