Gene omics information

Query gene ID	Contig18_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.5	Contig18_s_at	Contig18	-	-	8e-2	At5g25940	early nodulin-related	S.X.	H.G.	Please select
0.91	98.1	HT11N18r_s_at	HT11N18r	-	-	1e+0	At1g16025	unknown protein	S.X.	H.G.	Please select
0.83	94.0	Contig21626_at	Contig21626	-	-	4e+0	At5g59440	ZEU1 (ZEUS1)	S.X.	H.G.	Please select
0.80	92.5	Contig24429_at	Contig24429	-	-	2e+0	At5g39220	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select
0.67	84.7	Contig15721_at	Contig15721	-	-	1e+0	At5g59360	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig9101_s_at	Contig9101	-	-	7e+0	At5g23930	mitochondrial transcription termination factor-related / mTERF-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
40.6	99.9	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
37.6	99.9	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
37.6	99.9	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
33.6	99.9	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
28.7	99.9	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
27.1	99.8	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
26.2	99.8	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
26.2	99.8	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
25.1	99.8	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
25.1	99.8	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.73	0	847	HVSMEl0013J10r2_at	HVSMEl0013J10r2	-	-	7e-2	At5g25940	early nodulin-related	C.G.	S.X.	Please select
0.61	4e-150	529	HB09A04w_s_at	HB09A04w	-	-	3e+0	At3g50630	KRP2 (KIP-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.33	3e-15	81	Contig257_s_at	Contig257	-	-	2e+0	At2g47880	glutaredoxin family protein	C.G.	S.X.	Please select
0.18	3e-15	81	Contig821_at	Contig821	-	-	7e-2	At4g20810	transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein	C.G.	S.X.	Please select
0.27	4e-8	57	Contig566_s_at	Contig566	-	-	5e+0	At2g11005	glycine-rich protein	C.G.	S.X.	Please select
0.19	2e-7	56	HB14C23r_s_at	HB14C23r	-	-	7e-1	At2g47880	glutaredoxin family protein	C.G.	S.X.	Please select
0.04	1e-2	40	Contig2544_at	Contig2544	-	-	1e+0	At3g21890	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.04	1e-2	40	Contig2544_s_at	Contig2544	-	-	1e+0	At3g21890	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.01	4e-2	38	Contig8214_at	Contig8214	-	-	2e-1	At2g40150	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-2	38	Arabidopsis thaliana	At5g25940	832663	early nodulin-related	F:molecular_function unknown;P:unknown;C:mitochondrion;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	HgAffx.15037.1.S1_at	CB375286	-	-	6e-2	At5g66000	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	38	Oryza sativa	OsAffx.27107.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Populus trichocarpa	PtpAffx.129445.1.A1_at	CK095406	-	-	1e+1	At4g09000	14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.67	0	763	Triticum aestivum	Ta.58.1.S1_at	BJ239121	major allergen CM16 /// CM16 protein	-	3e+1	At5g06250	transcription factor	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1607117_at	CF515513	hypothetical protein LOC100255965	-	2e-2	At5g36960	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	34	Zea mays	Zm.10299.1.S1_at	AW172106	-	-	7e-1	At4g15910	ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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