Gene omics information

Query gene ID	Contig18921_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	Contig18921_at	Contig18921	-	-	1e+0	At1g49520	SWIB complex BAF60b domain-containing protein	S.X.	H.G.	Please select
0.67	84.7	Contig1648_at	Contig1648	-	-	3e-18	At1g66200	ATGSR2	S.X.	H.G.	Please select
0.60	77.3	HB25K17r_at	HB25K17r	-	-	2e+0	At4g09260	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig2809_at	Contig2809	-	-	5e-1	At1g21550	calcium-binding protein, putative	S.X.	H.G.	Please select
0.28	35.5	HVSMEn0017F07r2_at	HVSMEn0017F07r2	-	-	3e-7	At1g78560	bile acid:sodium symporter family protein	S.X.	H.G.	Please select
0.12	10.4	Contig15957_at	Contig15957	-	-	3e+0	At5g07100	WRKY26	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.7	99.0	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.8	98.9	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.2	98.7	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.1	98.7	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.3	98.5	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.0	98.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.9	98.3	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.8	98.3	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.4	98.1	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.2	98.0	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	32	Contig12942_at	Contig12942	-	-	4e-2	At3g57062	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	HVSMEa0012G14f_at	HVSMEa0012G14f	-	-	1e+1	At5g50540	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig5469_at	Contig5469	-	-	2e+0	At5g05140	transcription elongation factor-related	C.G.	S.X.	Please select
0.01	3e+0	32	Contig18293_at	Contig18293	-	-	1e-51	At4g22910	FZR2 (FIZZY-RELATED 2)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig1511_s_at	Contig1511	-	-	2e-103	At5g62690	TUB2	C.G.	S.X.	Please select
0.03	3e+0	32	HY09G09u_at	HY09G09u	-	-	1e+0	At1g15045	-	C.G.	S.X.	Please select
0.02	3e+0	32	Contig5468_at	Contig5468	-	-	6e+0	At5g51960	-	C.G.	S.X.	Please select
0.02	1e+1	30	Contig3935_s_at	Contig3935	-	-	5e+0	At1g74660	MIF1 (MINI ZINC FINGER 1)	C.G.	S.X.	Please select
0.02	1e+1	30	Contig26239_at	Contig26239	-	-	1e+0	At3g58730	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At1g49520	841376	SWIB complex BAF60b domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.83504.1.A1_at	BU549233	-	-	1e+0	At5g64813	LIP1 (Light Insensitive Period1)	C.G.	S.X.	Please select
0.15	1e-11	71	Oryza sativa	Os11g0293900	AK067658.1	-	UBX domain containing protein	1e+0	At1g55450	embryo-abundant protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.214288.1.S1_at	pmrna27790	hypothetical protein	-	3e-3	At1g63000	NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.55	0	728	Triticum aestivum	Ta.30932.1.S1_a_at	BJ296210	-	-	6e-1	At3g45910	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1613299_s_at	CF568796	-	-	3e-6	At2g34070	unknown protein	C.G.	S.X.	Please select
0.11	1e-5	50	Zea mays	Zm.6608.1.A1_at	CF015737	-	-	7e+0	At5g60510	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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