Gene omics information

Query gene ID	Contig18868_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig18868_at	Contig18868	-	-	6e-1	At4g01023	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.60	77.3	HX03C24u_at	HX03C24u	-	-	1e-2	At5g47500	pectinesterase family protein	S.X.	H.G.	Please select
0.60	77.3	Contig20310_at	Contig20310	-	-	3e+0	At5g56370	F-box family protein	S.X.	H.G.	Please select
0.60	77.3	Contig2411_at	Contig2411	-	-	2e-2	At4g21280	oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)	S.X.	H.G.	Please select
0.48	63.2	Contig21697_at	Contig21697	-	-	1e+0	At4g35980	unknown protein	S.X.	H.G.	Please select
0.30	37.0	Contig14520_at	Contig14520	-	-	6e+0	At5g01230	FtsJ-like methyltransferase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	97.9	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.4	97.5	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.0	97.2	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.5	96.7	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.7	95.5	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.5	95.1	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
3.4	94.8	GSM71144	OWB-R stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.3	94.6	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	36	Contig18525_at	Contig18525	-	-	3e-1	At5g27810	sequence-specific DNA binding / transcription factor	C.G.	S.X.	Please select
0.01	3e-1	36	Contig6637_s_at	Contig6637	-	-	1e-34	At5g47820	FRA1 (FRAGILE FIBER 1)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig9839_at	Contig9839	-	-	1e-2	At2g03630	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig4150_at	Contig4150	-	-	3e+0	At1g36000	LBD5 (LOB DOMAIN-CONTAINING PROTEIN 5)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig3651_s_at	Contig3651	-	-	1e+1	At5g25010	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig3651_at	Contig3651	-	-	1e+1	At5g25010	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig10912_at	Contig10912	-	-	2e-1	At4g28200	-	C.G.	S.X.	Please select
0.01	4e+0	32	Contig5147_at	Contig5147	-	-	1e-1	At4g33210	F-box family protein (FBL15)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig11978_at	Contig11978	-	-	3e+0	At3g03000	calmodulin, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At4g01023	826450	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	8e-1	36	Glycine max	GmaAffx.53670.1.S1_at	BE609193	-	-	6e-2	At2g21045	-	C.G.	S.X.	Please select
0.29	3e-140	500	Oryza sativa	Os03g0777700	AK120460.1	-	FAR1 domain containing protein	2e-1	At5g38720	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.50144.3.A1_a_at	CK097821	hypothetical protein	-	2e-2	At1g54215	proline-rich family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	1e-125	450	Triticum aestivum	Ta.20150.1.A1_at	CA670972	-	-	5e+0	At2g17240	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1622105_x_at	CF203247.1	-	-	6e-1	At5g38300	unknown protein	C.G.	S.X.	Please select
0.23	1e-24	113	Zea mays	Zm.9110.2.A1_a_at	BM334144	-	-	5e+0	At4g27490	3' exoribonuclease family domain 1-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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