CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig18816_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig18816_at Contig18816 - - 3e+0 At1g71180 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein S.X. H.G.
0.59 75.8 Contig15179_at Contig15179 - - 2e+0 At5g46360 KCO3 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3) S.X. H.G.
0.37 47.9 Contig4878_at Contig4878 - - 8e-19 At1g47260 GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2) S.X. H.G.
0.36 47.1 Contig16632_at Contig16632 - - 1e+0 At4g29960 unknown protein S.X. H.G.
0.35 45.1 Contig12673_at Contig12673 - - 1e-5 At4g15470 - S.X. H.G.
0.30 37.0 Contig15411_at Contig15411 - - 2e-4 At5g49890 CLC-C (CHLORIDE CHANNEL C) S.X. H.G.
0.30 37.0 rbaal22m07_at rbaal22m07 - - 2e-1 At1g06440 ubiquitin thiolesterase S.X. H.G.
0.27 32.1 Contig15347_at Contig15347 - - 3e-2 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related S.X. H.G.
0.25 28.9 Contig24772_at Contig24772 - - 1e-4 At5g63740 zinc finger protein-related S.X. H.G.
0.25 28.9 Contig13168_at Contig13168 - - 3e+0 At5g50130 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.2 98.7 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
7.3 98.5 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
7.0 98.4 GSM261032 Dicktoo control-rep3 GSE10329 Low temperature stress in cv. Dicktoo
5.4 97.5 GSM261025 ABA-Early-rep2 GSE10328 ABA experiment
5.1 97.3 GSM161200 cold treatment rep1 GSE6993 Barley low temperature stress
5.0 97.2 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
5.0 97.2 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment
5.0 97.2 GSM68896 8 h control replicate 2 GSE3097 Barley1 salinity stress study
4.9 97.1 GSM68890 3 h control replicate 2 GSE3097 Barley1 salinity stress study
4.7 96.9 GSM160744 drought control rep2 GSE6990 Barley drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-15 81 Contig7712_at Contig7712 - - 2e+0 At1g32700 zinc-binding family protein C.G. S.X.
0.08 2e-12 71 Contig7710_at Contig7710 - - 3e-2 At2g39430 disease resistance-responsive protein-related / dirigent protein-related C.G. S.X.
0.08 9e-5 46 Contig23909_at Contig23909 - - 4e+0 At3g56250 unknown protein C.G. S.X.
0.08 3e-4 44 HM06O15r_at HM06O15r - - 2e-1 At5g58570 unknown protein C.G. S.X.
0.04 1e-3 42 Contig7897_at Contig7897 - - 7e-3 At1g72140 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
0.02 1e-3 42 Contig6574_at Contig6574 - - 2e-2 At5g01180 PTR5 (PEPTIDE TRANSPORTER 5) C.G. S.X.
0.07 5e-3 40 Contig4619_at Contig4619 - - 2e+0 At3g44140 unknown protein C.G. S.X.
0.08 5e-3 40 Contig4620_at Contig4620 - - 5e+0 At2g40300 ATFER4 (ferritin 4) C.G. S.X.
0.03 5e-3 40 Contig7898_at Contig7898 - - 1e-4 At5g14420 RGLG2 (RING domain Ligase2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 32 Arabidopsis thaliana At1g71180 843458 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein F:coenzyme binding, oxidoreductase activity, phosphogluconate dehydrogenase (decarboxylating) activity, binding, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:cellular_component unknown;BOMFPA - - - C.G. S.X.
0.04 1e+0 34 Glycine max HgAffx.17097.1.S1_at CB279259 - - 3e+0 At5g14690 unknown protein C.G. S.X.
0.09 2e-24 113 Oryza sativa Os10g0554200 AK105765.1 - Nitrate transporter 2e-2 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) C.G. S.X.
0.05 9e-1 34 Populus trichocarpa Ptp.7893.1.S1_at DN500727 - - 9e+0 At5g42785 unknown protein C.G. S.X.
0.10 2e-10 65 Triticum aestivum Ta.21127.1.S1_at CA607301 - - 6e+0 At5g55893 unknown protein C.G. S.X.
0.04 8e-1 32 Vitis vinifera 1618312_at CB976210 hypothetical protein LOC100240958 - 8e-2 At1g22540 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
0.09 3e-7 54 Zea mays Zm.1482.2.A1_at CO531725 hypothetical protein LOC100279242 - 7e+0 At5g17280 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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