Gene omics information

Query gene ID	Contig18811_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	61.0	Contig18811_at	Contig18811	-	-	6e-1	At3g06435	Expressed protein	S.X.	H.G.	Please select
0.43	56.4	Contig19745_s_at	Contig19745	-	-	4e+0	At5g44430	PDF1.2c (plant defensin 1.2c)	S.X.	H.G.	Please select
0.29	35.5	Contig17251_s_at	Contig17251	-	-	1e+1	At4g33355	lipid binding	S.X.	H.G.	Please select
0.22	24.2	Contig1906_at	Contig1906	-	-	2e-16	At4g12780	heat shock protein binding	S.X.	H.G.	Please select
0.18	18.2	HS09L05u_at	HS09L05u	-	-	4e+0	At5g45350	proline-rich family protein	S.X.	H.G.	Please select
0.11	9.4	HV_CEa0006F12r2_s_at	HV_CEa0006F12r2	-	-	9e-1	At1g71470	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.4	99.2	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
9.9	99.1	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.0	98.7	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.4	98.5	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
7.2	98.5	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.8	98.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.8	97.8	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8	97.0	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7	96.9	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-7	56	Contig7775_at	Contig7775	beta3-glucuronyltransferase	-	3e+0	At5g42965	nucleic acid binding / ribonuclease H	C.G.	S.X.	Please select
0.01	2e-2	40	Contig11768_at	Contig11768	-	-	6e-20	At1g10700	ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3)	C.G.	S.X.	Please select
0.02	8e-2	38	Contig15777_at	Contig15777	-	-	5e+0	At5g41440	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	8e-2	38	Contig8892_at	Contig8892	flowering time control protein	-	4e-13	At4g16280	FCA	C.G.	S.X.	Please select
0.01	8e-2	38	Contig4852_at	Contig4852	-	-	7e-8	At5g55530	C2 domain-containing protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig5862_at	Contig5862	-	-	1e-3	At4g36890	IRX14 (irregular xylem 14)	C.G.	S.X.	Please select
0.02	3e-1	36	HA28H23r_s_at	HA28H23r	-	-	4e+0	At5g64250	2-nitropropane dioxygenase family / NPD family	C.G.	S.X.	Please select
0.02	3e-1	36	HA28H23r_at	HA28H23r	-	-	4e+0	At5g64250	2-nitropropane dioxygenase family / NPD family	C.G.	S.X.	Please select
0.01	3e-1	36	Contig9569_at	Contig9569	-	-	4e-2	At3g30845	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At3g06435	2745872	Expressed protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;BPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	6e-2	40	Glycine max	GmaAffx.33377.1.A1_at	BU544405	-	-	2e-1	At1g22140	unknown protein	C.G.	S.X.	Please select
0.36	6e-49	196	Oryza sativa	Os04g0103100	AK070873.1	-	Glycosyl transferase, family 43 protein	2e-1	At2g21060	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Populus trichocarpa	PtpAffx.204404.1.S1_at	pmrna8652	hypothetical protein	-	3e+0	At5g38435	SPH8 (S-PROTEIN HOMOLOGUE 8)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e-5	50	Triticum aestivum	Ta.5628.1.A1_at	AJ577569.1	-	-	7e-1	At1g18680	HNH endonuclease domain-containing protein	C.G.	S.X.	Please select
0.02	5e-2	38	Vitis vinifera	1617145_at	CD801008	-	-	2e+0	At5g52210	ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.08	1e-6	54	Zea mays	Zm.15932.1.A1_at	AJ577238.1	beta3-glucuronyltransferase	-	8e-1	At5g28610	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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