Gene omics information

Query gene ID	Contig18744_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	S.X.	H.G.	Please select
0.50	66.9	Contig16455_at	Contig16455	-	-	1e-1	At3g46880	unknown protein	S.X.	H.G.	Please select
0.50	66.9	HY03E10u_s_at	HY03E10u	-	-	1e+1	At5g63060	transporter	S.X.	H.G.	Please select
0.50	66.9	Contig1139_s_at	Contig1139	-	-	1e-19	At3g07110	60S ribosomal protein L13A (RPL13aA)	S.X.	H.G.	Please select
0.50	66.9	Contig841_x_at	Contig841	-	-	1e-35	At2g34420	LHB1B2	S.X.	H.G.	Please select
0.46	61.0	Contig26395_at	Contig26395	-	-	5e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.6	97.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Contig4188_at	Contig4188	-	-	5e-23	At4g31300	PBA1	C.G.	S.X.	Please select
0.02	2e-1	36	Contig10345_at	Contig10345	-	-	3e-6	At4g35600	CONNEXIN 32	C.G.	S.X.	Please select
0.02	2e-1	36	Contig4189_at	Contig4189	-	-	2e-15	At4g31300	PBA1	C.G.	S.X.	Please select
0.02	9e-1	34	Contig15830_at	Contig15830	-	-	4e-2	At1g52320	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	Contig14667_at	Contig14667	-	-	6e+0	At4g33560	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Contig3245_at	Contig3245	-	-	3e-14	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	C.G.	S.X.	Please select
0.02	4e+0	32	Contig21863_at	Contig21863	-	-	3e-1	At1g60870	MEE9 (maternal effect embryo arrest 9)	C.G.	S.X.	Please select
0.03	4e+0	32	rbasd27j06_s_at	rbasd27j06	-	-	1e-12	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please select
0.03	4e+0	32	rbasd27j06_at	rbasd27j06	-	-	1e-12	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g41630	834165	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	HgAffx.18561.1.S1_at	CA940620	-	-	2e-3	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	C.G.	S.X.	Please select
0.11	7e-17	89	Oryza sativa	Os01g0170800	AK101200.1	-	Protein prenyltransferase domain containingprotein	9e-1	At2g21880	ATRAB7A	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.213589.1.S1_at	pmrna26538	-	-	7e-11	At5g39040	ATTAP2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e+0	34	Triticum aestivum	TaAffx.12590.1.A1_at	BJ251211	-	-	1e+0	At5g20920	EIF2 BETA	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1616472_at	CF405517	hypothetical protein LOC100260255	-	1e+0	At5g36140	CYP716A2	C.G.	S.X.	Please select
0.06	2e-1	36	Zea mays	Zm.17765.1.S1_at	CK371533	-	-	1e+0	At2g25280	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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