Gene omics information

Query gene ID	Contig18703_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig18703_at	Contig18703	-	-	1e+0	At5g48205	zinc ion binding	S.X.	H.G.	Please select
0.67	84.7	Contig7221_s_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.60	77.3	HS18F06u_s_at	HS18F06u	-	-	7e-14	At2g47610	60S ribosomal protein L7A (RPL7aA)	S.X.	H.G.	Please select
0.55	72.0	EBem09_SQ001_B21_s_at	EBem09_SQ001_B21	-	-	2e+0	At5g36920	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig16972_at	Contig16972	-	-	5e-10	At5g64813	LIP1 (Light Insensitive Period1)	S.X.	H.G.	Please select
0.46	61.0	rbags18e07_s_at	rbags18e07	-	-	4e-1	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
133.1	100.0	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
52.2	100.0	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
41.4	99.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
27.7	99.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
21.6	99.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.9	99.4	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.2	99.1	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
8.6	98.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	6e-32	137	Contig8305_at	Contig8305	-	-	9e-13	At1g74310	ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101)	C.G.	S.X.	Please select
0.02	4e-2	38	Contig14879_at	Contig14879	-	-	2e+0	At4g11870	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig16086_at	Contig16086	-	-	6e-3	At4g39720	VQ motif-containing protein	C.G.	S.X.	Please select
0.04	2e-1	36	HVSMEb0004H19f_at	HVSMEb0004H19f	-	-	1e-1	At3g62550	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig25758_at	Contig25758	-	-	6e+0	At3g63095	-	C.G.	S.X.	Please select
0.01	2e+0	32	Contig4395_at	Contig4395	-	-	3e-1	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	C.G.	S.X.	Please select
0.03	2e+0	32	Contig6402_at	Contig6402	-	-	4e-1	At1g65710	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	HA08g16r_at	HA08g16r	-	-	8e-1	At2g04378	beta-galactosidase	C.G.	S.X.	Please select
0.02	2e+0	32	Contig14278_at	Contig14278	-	-	8e-3	At2g38320	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At5g48205	2746199	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	GmaAffx.5940.1.S1_at	AW780549	-	-	7e-4	At3g03210	unknown protein	C.G.	S.X.	Please select
0.12	2e-37	157	Oryza sativa	Os05g0519700	AF332981.1	-	101 kDa heat shock protein	2e-6	At1g74310	ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Populus trichocarpa	Ptp.1751.1.S1_at	CK103771	hypothetical protein	-	2e-17	At2g44770	phagocytosis and cell motility protein ELMO1-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.57	4e-121	434	Triticum aestivum	Ta.28758.1.S1_at	AJ603557	-	-	7e-3	At1g74310	ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101)	C.G.	S.X.	Please select
0.09	9e-2	36	Vitis vinifera	1615503_at	CF208342	heat shock protein 101	-	2e-26	At1g74310	ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101)	C.G.	S.X.	Please select
0.07	5e-38	157	Zea mays	Zm.438.1.S1_at	AF133840.1	heat-shock protein 101	-	3e-14	At1g74310	ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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