Gene omics information

Query gene ID	Contig18699_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.54	70.3	Contig18699_at	Contig18699	-	-	4e-3	At2g43950	OEP37	S.X.	H.G.	Please select
0.48	63.2	Contig2229_at	Contig2229	-	-	1e-35	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	S.X.	H.G.	Please select
0.41	53.9	Contig10128_at	Contig10128	-	-	7e-8	At1g72480	-	S.X.	H.G.	Please select
0.38	49.5	Contig13677_at	Contig13677	-	-	2e+0	At5g65080	MAF5 (MADS AFFECTING FLOWERING 5)	S.X.	H.G.	Please select
0.27	32.1	Contig14651_at	Contig14651	-	-	4e-1	At4g16830	nuclear RNA-binding protein (RGGA)	S.X.	H.G.	Please select
0.22	24.2	Contig10127_at	Contig10127	-	-	3e-5	At1g67600	-	S.X.	H.G.	Please select
0.22	24.2	Contig11479_s_at	Contig11479	-	-	9e-3	At4g25770	unknown protein	S.X.	H.G.	Please select
0.17	16.9	Contig2602_s_at	Contig2602	-	-	2e-2	At5g66010	RNA binding / nucleic acid binding / nucleotide binding	S.X.	H.G.	Please select
0.17	16.9	Contig1147_s_at	Contig1147	-	-	6e-15	At1g07790	HTB1	S.X.	H.G.	Please select
0.16	15.3	Contig16535_at	Contig16535	-	-	2e-7	At1g03090	MCCA	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.4	99.5	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.5	99.0	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.5	98.6	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.4	98.5	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.4	98.5	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.2	98.0	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
5.5	97.6	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-2	38	Contig4267_at	Contig4267	-	-	2e-8	At4g00830	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.04	3e-2	38	Contig22849_at	Contig22849	-	-	1e-2	At3g63230	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Contig8077_at	Contig8077	-	-	7e-9	At5g05710	pleckstrin homology (PH) domain-containing protein	C.G.	S.X.	Please select
0.01	1e-1	36	Contig7608_at	Contig7608	-	-	2e-18	At2g31660	SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2)	C.G.	S.X.	Please select
0.04	1e-1	36	EBro08_SQ008_B19_at	EBro08_SQ008_B19	-	-	3e+0	At5g19200	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Contig9959_at	Contig9959	-	-	4e-4	At1g02840	SR1	C.G.	S.X.	Please select
0.02	1e-1	36	Contig17815_at	Contig17815	-	-	1e-1	At3g42310	unknown protein	C.G.	S.X.	Please select
0.04	5e-1	34	EBro01_SQ001_M06_at	EBro01_SQ001_M06	-	-	8e-1	At5g20885	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	5e-1	34	Contig8579_at	Contig8579	-	-	2e+0	At5g05690	CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-3	42	Arabidopsis thaliana	At2g43950	819000	OEP37	Constitutes a peptide sensitive ion channel in chloroplast outer membranes. Accumulates in germinating seeds and developing embryos.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-2	38	Glycine max	GmaAffx.5822.1.S1_at	BU080575	-	-	1e-2	At5g61590	AP2 domain-containing transcription factor family protein	C.G.	S.X.	Please select
0.03	3e-2	40	Oryza sativa	OsAffx.22107.2.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e-3	42	Populus trichocarpa	PtpAffx.36234.1.S1_at	AJ771470	hypothetical protein	-	2e-9	At3g13340	WD-40 repeat family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.66025.1.S1_at	BJ211521	-	-	3e+0	At2g38860	YLS5	C.G.	S.X.	Please select
0.04	8e-2	36	Vitis vinifera	1607593_at	CF515318	hypothetical protein LOC100260987	-	1e-1	At2g27250	CLV3 (CLAVATA3)	C.G.	S.X.	Please select
0.04	5e-1	34	Zea mays	Zm.11746.1.A1_at	BM380405	-	-	1e-23	At5g50310	kelch repeat-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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