Gene omics information

Query gene ID	Contig18674_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig18674_at	Contig18674	-	-	5e-1	At1g67050	unknown protein	S.X.	H.G.	Please select
0.50	66.9	rbaal28o12_s_at	rbaal28o12	-	-	1e+0	At2g13570	NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7)	S.X.	H.G.	Please select
0.46	61.0	Contig15303_at	Contig15303	-	-	6e-1	At3g10860	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	S.X.	H.G.	Please select
0.46	61.0	Contig10338_at	Contig10338	-	-	4e-2	At5g54900	ATRBP45A (RNA-binding protein 45A)	S.X.	H.G.	Please select
0.44	58.9	Contig3497_s_at	Contig3497	-	-	4e+0	At5g67190	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select
0.32	40.3	Contig8153_at	Contig8153	-	-	5e-42	At3g09550	protein binding	S.X.	H.G.	Please select
0.16	15.3	Contig18051_at	Contig18051	-	-	4e-1	At1g75250	ATRL6 (ARABIDOPSIS RAD-LIKE 6)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.5	99.5	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
11.2	99.2	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
9.2	99.0	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
9.2	99.0	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
8.4	98.8	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
7.6	98.6	GSM261029	ABA-Late-rep3	GSE10328	ABA experiment
7.5	98.6	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.4	98.5	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
7.1	98.4	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
6.9	98.3	GSM160815	drought control rep3	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	7e-122	436	HV_CEa0009C07r2_at	HV_CEa0009C07r2	-	-	3e-1	At5g65510	AIL7 (AINTEGUMENTA-like 7)	C.G.	S.X.	Please select
0.17	5e-27	121	Contig20257_at	Contig20257	-	-	3e-1	At5g50915	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.02	6e-2	38	Contig12268_at	Contig12268	-	-	1e+0	At5g43175	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.01	6e-2	38	Contig8666_at	Contig8666	-	-	1e-30	At3g10420	sporulation protein-related	C.G.	S.X.	Please select
0.02	2e-1	36	Contig8940_s_at	Contig8940	-	-	2e-3	At3g02000	ROXY1	C.G.	S.X.	Please select
0.02	1e+0	34	Contig9952_at	Contig9952	-	-	4e-5	At5g44650	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig18979_at	Contig18979	-	-	1e+0	At3g45230	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig23168_at	Contig23168	-	-	4e-3	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig9951_s_at	Contig9951	-	-	1e-7	At5g44650	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	36	Arabidopsis thaliana	At1g67050	843025	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	36	Glycine max	GmaAffx.71769.1.S1_at	BE346144	-	-	5e+0	At4g14342	pre-mRNA splicing factor 10 kDa subunit, putative	C.G.	S.X.	Please select
0.03	6e-2	40	Oryza sativa	OsAffx.28912.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	7e-1	36	Populus trichocarpa	PtpAffx.85031.1.A1_at	CK091284	hypothetical protein	-	5e-1	At3g47670	enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	3e-18	93	Triticum aestivum	TaAffx.59524.1.S1_at	CA599408	-	-	1e+0	At3g06280	-	C.G.	S.X.	Please select
0.03	6e-1	34	Vitis vinifera	1619697_at	CB341291	-	-	1e-9	At4g18100	60S ribosomal protein L32 (RPL32A)	C.G.	S.X.	Please select
0.03	9e-1	34	Zea mays	Zm.7304.2.S1_a_at	CA409050	hypothetical protein LOC100274841 /// hypothetical protein LOC100275336	-	3e-1	At1g31335	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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