Gene omics information

Query gene ID	Contig18440_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig18440_at	Contig18440	-	-	2e+0	At3g56590	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.67	84.7	Contig18444_at	Contig18444	-	-	2e+0	At1g08650	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	S.X.	H.G.	Please select
0.44	58.9	Contig2490_at	Contig2490	-	-	1e-6	At1g62660	beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar	S.X.	H.G.	Please select
0.40	53.1	Contig11836_at	Contig11836	-	-	6e-10	At1g22650	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	S.X.	H.G.	Please select
0.36	47.1	Contig16389_at	Contig16389	-	-	4e-9	At3g20440	alpha-amylase/ catalytic/ cation binding	S.X.	H.G.	Please select
0.30	37.0	Contig13286_at	Contig13286	-	-	2e+1	At5g10620	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.0	99.1	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
9.2	99.0	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
8.4	98.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.1	98.0	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.5	97.6	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	36	Contig5778_at	Contig5778	-	-	2e-10	At4g22260	IM (IMMUTANS)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8046_at	Contig8046	-	-	4e-22	At5g49820	emb1879 (embryo defective 1879)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig17043_at	Contig17043	-	-	1e-1	At5g53720	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig11768_at	Contig11768	-	-	6e-20	At1g10700	ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7686_at	Contig7686	-	-	2e-1	At1g60650	glycine-rich RNA-binding protein, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7066_at	Contig7066	-	-	2e-23	At2g40730	HEAT repeat-containing protein	C.G.	S.X.	Please select
0.02	4e+0	32	HVSMEl0009A21r2_s_at	HVSMEl0009A21r2	-	-	3e+0	At3g17155	-	C.G.	S.X.	Please select
0.02	4e+0	32	Contig3332_at	Contig3332	-	-	2e-1	At3g21215	RNA-binding protein, putative	C.G.	S.X.	Please select
0.02	4e+0	32	Contig24776_at	Contig24776	-	-	2e-7	At5g65470	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e+0	34	Arabidopsis thaliana	At3g56590	824826	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	GmaAffx.76494.1.S1_at	AW309024	-	-	7e-20	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.16	3e-81	303	Oryza sativa	Os05g0196500	AK121381.1	-	Transcription factor jumonji, JmjN domaincontaining protein	2e-12	At1g08620	transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e+0	34	Populus trichocarpa	PtpAffx.85620.1.S1_at	CK093878	jumonji domain protein	-	8e-16	At1g08620	transcription factor	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.75	0	1241	Triticum aestivum	Ta.7383.1.A1_at	CA722162	-	-	5e-1	At5g44316	ATP-binding-cassette transporter, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1620442_at	CB971589	hypothetical protein LOC100266848	-	1e-15	At3g02110	scpl25 (serine carboxypeptidase-like 25)	C.G.	S.X.	Please select
0.35	1e-61	236	Zea mays	Zm.4617.1.A1_at	AI737356	-	-	2e+0	At3g54270	sucrose-phosphatase 3 (SPP3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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