CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig18431_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 78.7 Contig18431_at Contig18431 - - 9e-2 At1g78530 protein kinase family protein S.X. H.G.
0.61 78.7 Contig20219_at Contig20219 - - 1e-2 At3g24770 CLE41 (CLAVATA3/ESR-RELATED 41) S.X. H.G.
0.60 77.3 Contig8790_at Contig8790 - - 8e-17 At5g02800 protein kinase family protein S.X. H.G.
0.53 69.7 Contig11287_s_at Contig11287 - - 1e+0 At5g15960 KIN1 S.X. H.G.
0.33 42.6 Contig21671_at Contig21671 - - 1e+0 At4g15260 UDP-glucoronosyl/UDP-glucosyl transferase family protein S.X. H.G.
0.31 38.6 Contig20711_at Contig20711 - - 1e+0 At3g50337 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.0 99.9 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
30.5 99.9 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
29.0 99.9 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
14.1 99.5 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
11.9 99.3 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
9.0 98.9 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
7.3 98.5 GSM146366 Maythorpe Root Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.0 98.4 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.9 98.3 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.6 98.2 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 1e-26 119 Contig7183_at Contig7183 - - 6e+0 At5g37475 translation initiation factor-related C.G. S.X.
0.13 5e-8 57 HU14N04u_at HU14N04u - - 5e+0 At4g13540 unknown protein C.G. S.X.
0.16 5e-8 57 Contig20512_s_at Contig20512 - - 1e+0 At1g24430 transferase/ transferase, transferring acyl groups other than amino-acyl groups C.G. S.X.
0.16 5e-8 57 Contig20512_at Contig20512 - - 1e+0 At1g24430 transferase/ transferase, transferring acyl groups other than amino-acyl groups C.G. S.X.
0.04 3e-6 52 Contig12636_at Contig12636 - - 7e-1 At5g02530 RNA and export factor-binding protein, putative C.G. S.X.
0.06 1e-5 50 EBma03_SQ002_F16_s_at EBma03_SQ002_F16 - - 2e+0 At1g52490 - C.G. S.X.
0.07 3e-3 42 EBpi01_SQ003_C12_s_at EBpi01_SQ003_C12 - - 5e-2 At4g35260 IDH1 (ISOCITRATE DEHYDROGENASE 1) C.G. S.X.
0.07 3e-3 42 EBpi01_SQ003_C12_at EBpi01_SQ003_C12 - - 5e-2 At4g35260 IDH1 (ISOCITRATE DEHYDROGENASE 1) C.G. S.X.
0.03 1e-2 40 Contig13405_at Contig13405 - - 5e+0 At5g01350 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-2 38 Arabidopsis thaliana At1g78530 844189 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA - - - C.G. S.X.
0.04 5e-1 36 Glycine max GmaAffx.72562.1.S1_at BI941863 - - 9e-1 At4g08520 clathrin adaptor complex small chain family protein C.G. S.X.
0.06 5e-5 50 Oryza sativa OsAffx.11413.1.S1_x_at - - - 0 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.215068.1.S1_at pmrna29029 hypothetical protein - 2e-1 At1g66820 glycine-rich protein C.G. S.X.
0.26 5e-22 105 Triticum aestivum Ta.4515.1.S1_at BJ267518 - - 1e+0 At1g60625 RALFL6 (RALF-LIKE 6) C.G. S.X.
0.03 7e+0 30 Vitis vinifera 1621300_at CB920384 hypothetical protein LOC100244618 - 4e+0 At4g23420 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.03 2e-1 36 Zea mays Zm.14463.1.A1_at BM336602 hypothetical protein LOC100194081 - 2e+0 At4g22380 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage