Gene omics information

Query gene ID	Contig18428_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig18428_at	Contig18428	-	-	7e-7	At1g15060	-	S.X.	H.G.	Please select
0.67	84.7	Contig11252_at	Contig11252	-	-	2e+0	At1g01130	unknown protein	S.X.	H.G.	Please select
0.61	78.7	Contig11250_s_at	Contig11250	-	-	4e+0	At5g22810	GDSL-motif lipase, putative	S.X.	H.G.	Please select
0.23	26.1	Contig17794_at	Contig17794	-	-	3e-9	At2g30700	unknown protein	S.X.	H.G.	Please select
0.06	4.8	Contig11473_at	Contig11473	-	-	2e-27	At1g03000	PEX6 (PEROXIN 6)	S.X.	H.G.	Please select
0.06	4.8	Contig20322_at	Contig20322	-	-	2e+0	At4g12860	UNE14 (unfertilized embryo sac 14)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.3	99.7	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
16.0	99.6	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
15.0	99.5	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
12.7	99.4	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
11.3	99.3	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
11.3	99.3	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
9.8	99.1	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
9.8	99.1	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
9.6	99.0	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
9.3	99.0	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	4e-127	454	Contig20207_s_at	Contig20207	-	-	7e-5	At1g15060	-	C.G.	S.X.	Please select
0.01	8e-2	38	Contig4123_at	Contig4123	-	-	3e-10	At2g14740	ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig19265_at	Contig19265	-	-	5e+0	At5g53742	-	C.G.	S.X.	Please select
0.02	5e+0	32	HVSMEi0009N09r2_at	HVSMEi0009N09r2	-	-	6e-5	At1g05840	aspartyl protease family protein	C.G.	S.X.	Please select
0.02	5e+0	32	Contig9918_at	Contig9918	-	-	4e-2	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.01	5e+0	32	Contig10824_at	Contig10824	-	-	7e-2	At5g11350	endonuclease/exonuclease/phosphatase family protein	C.G.	S.X.	Please select
0.02	5e+0	32	Contig17831_at	Contig17831	-	-	5e-4	At5g10470	kinesin motor protein-related	C.G.	S.X.	Please select
0.01	5e+0	32	Contig26174_at	Contig26174	-	-	1e-4	At3g19260	LOH2 (LAG ONE HOMOLOGUE 2)	C.G.	S.X.	Please select
0.01	5e+0	32	Contig10292_at	Contig10292	-	-	9e-23	At1g07650	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	7e-7	56	Arabidopsis thaliana	At1g15060	838071	-	F:unknown;P:unknown;C:chloroplast;BPOM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	1e-6	56	Glycine max	GmaAffx.8437.1.S1_at	BF219580	-	-	8e-11	At1g73750	-	C.G.	S.X.	Please select
0.55	0	983	Oryza sativa	Os01g0692600	AK100145.1	-	Conserved hypothetical protein	1e-3	At1g15060	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-4	48	Populus trichocarpa	PtpAffx.90906.1.A1_at	CV262737	hypothetical protein	-	5e-16	At1g15060	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	7e-1	36	Triticum aestivum	TaAffx.104603.1.S1_at	CA747148	-	-	7e+0	At5g52901	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Vitis vinifera	1621140_at	CB970690	hypothetical protein LOC100266085	-	2e+0	At3g03930	protein kinase-related	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	Zm.9720.1.A1_at	BM336624	-	-	4e+0	At5g35300	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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