Gene omics information

Query gene ID	Contig18403_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig18403_at	Contig18403	-	-	3e-1	At1g73490	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.67	84.7	Contig7221_s_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.67	84.7	Contig18703_at	Contig18703	-	-	1e+0	At5g48205	zinc ion binding	S.X.	H.G.	Please select
0.59	75.8	HS18F06u_s_at	HS18F06u	-	-	7e-14	At2g47610	60S ribosomal protein L7A (RPL7aA)	S.X.	H.G.	Please select
0.38	49.5	EBem09_SQ001_B21_s_at	EBem09_SQ001_B21	-	-	2e+0	At5g36920	unknown protein	S.X.	H.G.	Please select
0.30	37.0	HY09M22u_s_at	HY09M22u	-	-	3e+0	At2g04378	beta-galactosidase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
73.7	100.0	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
71.3	100.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
21.9	99.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
20.0	99.7	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
17.9	99.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
17.5	99.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.0	98.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	4e-20	97	Contig14301_at	Contig14301	-	-	5e-1	At3g27906	unknown protein	C.G.	S.X.	Please select
0.02	2e-3	42	Contig7001_at	Contig7001	-	-	2e-1	At1g02360	chitinase, putative	C.G.	S.X.	Please select
0.03	4e-2	38	Contig6797_at	Contig6797	-	-	7e+0	At4g19980	unknown protein	C.G.	S.X.	Please select
0.02	4e-2	38	Contig12636_at	Contig12636	-	-	7e-1	At5g02530	RNA and export factor-binding protein, putative	C.G.	S.X.	Please select
0.02	4e-2	38	Contig5071_s_at	Contig5071	-	-	4e+0	At3g20750	zinc finger (GATA type) family protein	C.G.	S.X.	Please select
0.03	4e-2	38	Contig25314_at	Contig25314	-	-	2e+0	At5g49560	unknown protein	C.G.	S.X.	Please select
0.03	4e-2	38	Contig21330_at	Contig21330	-	-	5e-1	At2g41342	unknown protein	C.G.	S.X.	Please select
0.02	4e-2	38	Contig11712_at	Contig11712	-	-	3e-18	At5g10070	RNase L inhibitor protein-related	C.G.	S.X.	Please select
0.02	1e-1	36	Contig14145_at	Contig14145	-	-	2e+0	At3g30220	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At1g73490	843684	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	PsAffx.C48000079_s_at	PsAffx.C48000079	-	-	3e+0	At4g38860	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.12	8e-34	145	Oryza sativa	Os06g0612900	9634.m03944	-	Conserved hypothetical protein	4e-7	At5g12960	catalytic	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.5817.2.S1_at	CF232264	-	-	3e-1	At3g51325	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	3e-13	75	Triticum aestivum	Ta.24548.1.S1_at	CD930155	-	-	9e+0	At3g51100	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1612884_at	CA810969	-	-	4e+0	At3g24513	-	C.G.	S.X.	Please select
0.28	5e-41	167	Zea mays	Zm.12046.1.A1_at	BM416783	-	-	1e+0	At3g30260	AGL79 (AGAMOUS-LIKE 79)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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