Gene omics information

Query gene ID	Contig18385_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.37	47.9	Contig18385_at	Contig18385	-	-	2e+0	Atmg01170	-	S.X.	H.G.	Please select
0.67	84.7	HVSMEc0019C19f_at	HVSMEc0019C19f	-	-	0	Atcg00020	-	S.X.	H.G.	Please select
0.46	61.0	Contig12398_at	Contig12398	-	-	2e-1	At2g31240	tetratricopeptide repeat (TPR)-containing protein	S.X.	H.G.	Please select
0.44	58.9	Contig12652_at	Contig12652	-	-	1e+0	At4g00420	double-stranded RNA-binding domain (DsRBD)-containing protein	S.X.	H.G.	Please select
0.36	47.1	Contig5117_at	Contig5117	-	-	8e-2	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	S.X.	H.G.	Please select
0.35	45.1	Contig11464_at	Contig11464	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.5	99.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
17.2	99.6	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.4	99.5	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.2	99.5	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.0	99.5	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
13.7	99.5	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
12.7	99.4	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.5	99.3	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.2	99.2	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
11.0	99.2	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-3	42	Contig13774_at	Contig13774	-	-	5e-1	At4g03630	root nodule development protein-related	C.G.	S.X.	Please select
0.03	1e-2	40	EBes01_SQ004_N07_at	EBes01_SQ004_N07	-	-	3e-1	At1g20140	ASK4 (ARABIDOPSIS SKP1-LIKE 4)	C.G.	S.X.	Please select
0.02	1e-2	40	Contig1591_s_at	Contig1591	-	-	2e-12	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
0.02	6e-2	38	Contig12302_at	Contig12302	-	-	1e-2	At5g62440	-	C.G.	S.X.	Please select
0.02	6e-2	38	Contig15708_at	Contig15708	-	-	7e+0	At5g63480	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig6698_at	Contig6698	-	-	9e-19	At1g20330	SMT2 (STEROL METHYLTRANSFERASE 2)	C.G.	S.X.	Please select
0.01	9e-1	34	Contig3716_at	Contig3716	-	-	4e-2	At4g37110	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.03	9e-1	34	Contig24342_at	Contig24342	-	-	3e+0	At3g26510	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	C.G.	S.X.	Please select
0.02	9e-1	34	Contig16257_s_at	Contig16257	-	-	7e-2	At1g32260	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	Atmg01170	-	-	ATPase subunit 6	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	PsAffx.psMA002xO11f_s_at	PsAffx.psMA002xO11f	-	-	5e+0	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	C.G.	S.X.	Please select
0.34	7e-48	192	Oryza sativa	OsAffx.23166.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	7e-1	36	Populus trichocarpa	PtpAffx.62807.1.A1_at	CV261399	hypothetical protein	-	3e-1	At4g18500	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	6e-16	85	Triticum aestivum	TaAffx.53090.1.S1_at	CA696758	-	-	7e-1	At4g24026	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1618536_at	CB348415	-	-	1e+0	At5g22930	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Zea mays	Zm.16211.1.S1_at	CN845499	-	-	2e+0	At2g25590	agenet domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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