Gene omics information

Query gene ID	Contig18384_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig18384_at	Contig18384	-	-	2e+0	At1g56233	-	S.X.	H.G.	Please select
0.77	90.8	HV_CEb0008L21r2_at	HV_CEb0008L21r2	-	-	2e+1	At5g35320	unknown protein	S.X.	H.G.	Please select
0.55	72.0	Contig17678_at	Contig17678	-	-	3e-4	At2g47330	DEAD/DEAH box helicase, putative	S.X.	H.G.	Please select
0.46	61.0	Contig25430_at	Contig25430	-	-	2e+0	At4g16410	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig26103_at	Contig26103	-	-	1e-1	At5g51580	unknown protein	S.X.	H.G.	Please select
0.36	47.1	rbags21o19_at	rbags21o19	-	-	3e-1	At5g26114	unknown protein	S.X.	H.G.	Please select
0.25	28.9	HVSMEg0006E16f2_at	HVSMEg0006E16f2	-	-	3e+0	At2g39540	gibberellin-regulated family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.5	99.9	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
33.5	99.9	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
29.6	99.9	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
29.6	99.9	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
28.3	99.8	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
28.3	99.8	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
22.8	99.8	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
22.8	99.8	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
12.0	99.3	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
12.0	99.3	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-2	40	Contig12394_at	Contig12394	-	-	1e+1	At5g35110	unknown protein	C.G.	S.X.	Please select
0.03	5e-2	38	Contig3783_at	Contig3783	-	-	4e-1	At2g30766	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Contig12436_at	Contig12436	-	-	2e-1	At2g39410	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.03	5e-2	38	Contig23903_at	Contig23903	-	-	1e+0	At2g30766	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Contig10476_at	Contig10476	-	-	1e-1	At1g17700	PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)	C.G.	S.X.	Please select
0.03	5e-2	38	Contig3783_s_at	Contig3783	-	-	4e-1	At2g30766	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig14599_at	Contig14599	-	-	3e-2	At3g17160	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig3907_at	Contig3907	-	-	6e-10	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please select
0.01	2e-1	36	Contig9776_at	Contig9776	-	-	3e-7	At2g34750	RNA polymerase I specific transcription initiation factor RRN3 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At1g56233	3767465	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-5	50	Glycine max	GmaAffx.28996.1.A1_at	BU548388	-	-	2e-5	At5g04190	PKS4 (phytochrome kinase substrate 4)	C.G.	S.X.	Please select
0.23	1e-33	145	Oryza sativa	OsAffx.30548.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	PtpAffx.40283.1.S1_at	CV271867	hypothetical protein	-	2e-1	At5g60680	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	4e-4	46	Triticum aestivum	TaAffx.24156.1.S1_at	CA724303	-	-	1e+1	At4g13450	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1619999_at	CD799397	hypothetical protein LOC100261404	-	8e-1	At5g01712	CPuORF48 (Conserved peptide upstream open reading frame 48)	C.G.	S.X.	Please select
0.02	7e-1	34	Zea mays	Zm.17340.1.S1_at	CK370398	-	-	4e-1	At4g31040	proton extrusion protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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