Gene omics information

Query gene ID	Contig18328_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	72.0	Contig18328_at	Contig18328	-	-	5e-1	Atmg00110	-	S.X.	H.G.	Please select
0.83	94.0	Contig25401_at	Contig25401	-	-	4e-3	At1g78710	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig25651_at	Contig25651	-	-	5e-1	At2g41225	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig23171_at	Contig23171	-	-	2e+0	At1g11570	nuclear transport factor 2 (NTF2), putative	S.X.	H.G.	Please select
0.43	56.4	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.40	53.1	Contig12656_s_at	Contig12656	-	-	8e+0	At5g45830	DOG1 (DELAY OF GERMINATION 1)	S.X.	H.G.	Please select
0.27	32.1	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	97.4	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
5.1	97.3	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
4.4	96.6	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
4.2	96.3	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.8	95.7	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
3.8	95.7	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.8	95.7	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM68900	8 h salt stressed replicate 3	GSE3097	Barley1 salinity stress study
3.6	95.3	GSM398267	HS41-1_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-2	40	Contig9386_at	Contig9386	-	-	8e-17	At5g05980	ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig6051_s_at	Contig6051	-	-	5e+0	At5g07090	40S ribosomal protein S4 (RPS4B)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig6049_at	Contig6049	-	-	7e+0	At5g07090	40S ribosomal protein S4 (RPS4B)	C.G.	S.X.	Please select
0.02	4e+0	32	EBro08_SQ007_I17_at	EBro08_SQ007_I17	-	-	3e+0	At2g31410	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig11727_at	Contig11727	-	-	2e-10	At3g08840	D-alanine--D-alanine ligase family	C.G.	S.X.	Please select
0.01	4e+0	32	X62655.1_s_at	X62655.1	-	-	2e+1	At5g05598	-	C.G.	S.X.	Please select
0.01	4e+0	32	Contig15021_at	Contig15021	-	-	2e-1	At5g09450	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig12861_at	Contig12861	-	-	1e-8	At3g05420	ACBP4 (ACYL-COA BINDING PROTEIN 4)	C.G.	S.X.	Please select
0.02	4e+0	32	Contig23379_at	Contig23379	-	-	9e-2	At2g02020	proton-dependent oligopeptide transport (POT) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	Arabidopsis thaliana	Atmg00110	-	-	Encodes a mitochondria-encoded cytochrome c biogenesis protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	36	Glycine max	Gma.14461.1.A1_at	CD403403	-	-	4e-2	At4g16045	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.02	4e+0	34	Oryza sativa	OsAffx.9574.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.22670.1.S1_a_at	CK114117	hypothetical protein	-	2e+0	At3g22930	calmodulin, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.85362.1.S1_at	CA623391	-	-	1e+0	At5g02000	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1620548_at	CB339904	-	-	4e-1	At2g41780	unknown protein	C.G.	S.X.	Please select
0.03	4e-3	42	Zea mays	Zm.4642.1.A1_at	AI737769	hypothetical protein LOC100272780	-	1e+0	At5g04080	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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