Gene omics information

Query gene ID	Contig18246_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	63.2	Contig18246_at	Contig18246	-	-	2e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	S.X.	H.G.	Please select
0.56	74.3	Contig4748_s_at	Contig4748	ribophorin I	-	2e-2	At1g76400	ribophorin I family protein	S.X.	H.G.	Please select
0.55	72.0	HU09E20u_s_at	HU09E20u	-	-	3e+0	At3g55820	-	S.X.	H.G.	Please select
0.50	66.9	Contig4750_at	Contig4750	-	-	4e+0	At5g15360	unknown protein	S.X.	H.G.	Please select
0.48	63.2	Contig4890_at	Contig4890	-	-	5e-4	At3g60820	PBF1	S.X.	H.G.	Please select
0.41	53.9	Contig9332_at	Contig9332	-	-	6e+0	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	S.X.	H.G.	Please select
0.40	53.1	Contig8374_at	Contig8374	-	-	5e-1	At5g62900	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig10520_s_at	Contig10520	-	-	3e-1	At4g39990	RABA4B (RAB GTPASE HOMOLOG A4B)	S.X.	H.G.	Please select
0.33	42.6	Contig10818_at	Contig10818	-	-	1e-2	At1g47970	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig4413_s_at	Contig4413	-	-	7e+0	At2g40790	ATCXXS2 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.9	99.3	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
9.4	99.0	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
7.5	98.6	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
7.3	98.5	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
6.5	98.2	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
6.3	98.1	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
6.1	98.0	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
5.9	97.9	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
5.7	97.7	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
5.7	97.7	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	3e-6	52	HW08F21u_at	HW08F21u	-	-	1e+0	At4g19140	unknown protein	C.G.	S.X.	Please select
0.06	5e-5	48	Contig13408_at	Contig13408	-	-	3e-1	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please select
0.06	5e-5	48	Contig13407_s_at	Contig13407	-	-	8e-5	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please select
0.02	8e-4	44	Contig3024_at	Contig3024	-	-	3e+0	At3g13310	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.04	3e-3	42	Contig16821_at	Contig16821	-	-	4e+0	Atmg00280	-	C.G.	S.X.	Please select
0.03	3e-3	42	Contig15214_at	Contig15214	-	-	6e+0	At4g31441	unknown protein	C.G.	S.X.	Please select
0.03	3e-3	42	Contig4897_at	Contig4897	-	-	8e-1	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.04	5e-2	38	HV_CEb0017D17f_at	HV_CEb0017D17f	-	-	4e+0	At4g30660	hydrophobic protein, putative / low temperature and salt responsive protein, putative	C.G.	S.X.	Please select
0.03	5e-2	38	Contig14540_at	Contig14540	-	-	2e+0	At4g19095	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At4g27410	828849	RD26 (RESPONSIVE TO DESICCATION 26)	Encodes a NAC transcription factor induced in response to dessication. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.19696.1.S1_at	BU083917	-	-	2e-1	At2g28700	AGL46 (AGAMOUS-LIKE 46)	C.G.	S.X.	Please select
0.16	1e-8	61	Oryza sativa	Os01g0223000	AK071394.1	-	Lipolytic enzyme, G-D-S-L family protein	2e+0	At1g28590	lipase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-4	46	Populus trichocarpa	PtpAffx.49777.1.A1_at	CV271490	hypothetical protein	-	2e+0	At1g68000	ATPIS1 (PHOSPHATIDYLINOSITOL SYNTHASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	6e-148	523	Triticum aestivum	TaAffx.12439.1.A1_at	BJ263564	-	-	7e-2	At3g43410	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1609979_at	BQ792476	hypothetical protein LOC100246852	-	2e-23	At2g17230	EXL5 (EXORDIUM LIKE 5)	C.G.	S.X.	Please select
0.03	6e-1	34	Zea mays	Zm.4076.1.S1_at	BM266703	esterase	-	5e-2	At1g09390	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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