Gene omics information

Query gene ID	Contig18135_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	75.8	Contig18135_at	Contig18135	-	-	2e+0	At5g67300	MYBR1 (MYB DOMAIN PROTEIN R1)	S.X.	H.G.	Please select
0.73	88.7	Contig15427_at	Contig15427	-	-	7e+0	At4g29110	unknown protein	S.X.	H.G.	Please select
0.61	78.7	HX05P09r_at	HX05P09r	-	-	9e-1	At5g60350	unknown protein	S.X.	H.G.	Please select
0.53	69.7	Contig9561_at	Contig9561	-	-	1e+1	At4g15780	ATVAMP724	S.X.	H.G.	Please select
0.31	38.6	Contig12675_s_at	Contig12675	-	-	1e+0	At4g28150	unknown protein	S.X.	H.G.	Please select
0.26	30.4	S0001000058H07F1_s_at	S0001000058H07F1	-	-	4e+0	At5g50180	protein kinase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
82.4	100.0	GSM373001	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
36.4	99.9	GSM373007	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
27.5	99.8	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
26.2	99.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
19.2	99.7	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.9	99.5	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
12.3	99.4	GSM373008	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.2	99.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.2	99.2	GSM373004	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.2	99.1	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	4e-22	105	Contig5424_at	Contig5424	-	-	6e-1	At1g80400	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.21	9e-20	97	Contig23355_at	Contig23355	-	-	5e+0	At4g16380	metal ion binding	C.G.	S.X.	Please select
0.12	2e-18	93	Contig5426_s_at	Contig5426	-	-	1e-1	At3g47160	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.12	2e-18	93	Contig5426_at	Contig5426	-	-	1e-1	At3g47160	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.06	5e-9	61	Contig10125_s_at	Contig10125	-	-	8e-2	At4g30067	LCR63 (Low-molecular-weight cysteine-rich 63)	C.G.	S.X.	Please select
0.05	5e-9	61	Contig10126_at	Contig10126	-	-	9e-2	At4g30067	LCR63 (Low-molecular-weight cysteine-rich 63)	C.G.	S.X.	Please select
0.04	5e-9	61	Contig5423_at	Contig5423	-	-	6e-1	At1g09370	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select
0.16	8e-8	57	Contig23195_at	Contig23195	-	-	1e+0	At2g41550	transcription termination factor	C.G.	S.X.	Please select
0.12	5e-3	42	Contig23431_at	Contig23431	-	-	2e+0	At4g21865	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g67300	836865	MYBR1 (MYB DOMAIN PROTEIN R1)	Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	PsAffx.psHB013xM05f_at	PsAffx.psHB013xM05f	-	-	4e+0	At3g01570	glycine-rich protein / oleosin	C.G.	S.X.	Please select
0.02	5e+0	34	Oryza sativa	OsAffx.6703.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.77829.1.A1_at	CK092005	-	-	7e-1	At5g28020	CYSD2 (CYSTEINE SYNTHASE D2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	7e-10	65	Triticum aestivum	Ta.3543.1.A1_at	BJ220370	-	-	3e-1	At2g17785	zinc-binding protein-related	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1613457_s_at	CF211789	hypothetical protein LOC100248919	-	6e-21	At3g60620	phosphatidate cytidylyltransferase family protein	C.G.	S.X.	Please select
0.03	2e-2	40	Zea mays	Zm.4327.1.S1_at	BI993026	-	-	1e-15	At4g12770	heat shock protein binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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