Gene omics information

Query gene ID	Contig18089_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig18089_at	Contig18089	-	-	5e+0	At4g31330	unknown protein	S.X.	H.G.	Please select
0.61	78.7	Contig11858_at	Contig11858	-	-	1e+0	At2g17560	HMGB4 (HIGH MOBILITY GROUP B 4)	S.X.	H.G.	Please select
0.57	74.9	HU14G08u_s_at	HU14G08u	-	-	3e-1	At5g38400	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig15728_at	Contig15728	-	-	2e+0	At3g21215	RNA-binding protein, putative	S.X.	H.G.	Please select
0.36	47.1	HA07k01r_at	HA07k01r	-	-	1e+0	At3g48640	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig8818_at	Contig8818	-	-	2e+0	At5g47080	CKB1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
54.7	100.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
50.4	99.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
33.4	99.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
16.0	99.6	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
15.0	99.5	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
12.7	99.4	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
11.1	99.2	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
7.9	98.7	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
7.6	98.6	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
5.1	97.3	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-1	34	rbags10m23_at	rbags10m23	-	-	1e+0	At1g15125	S-adenosylmethionine-dependent methyltransferase/ methyltransferase	C.G.	S.X.	Please select
0.04	6e-1	34	Contig22019_at	Contig22019	-	-	7e-1	At5g23405	high mobility group (HMG1/2) family protein	C.G.	S.X.	Please select
0.03	6e-1	34	Contig20013_at	Contig20013	-	-	2e-2	At4g17440	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig6877_s_at	Contig6877	-	-	3e+0	At4g28140	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.03	2e+0	32	HVSMEl0014D05r2_at	HVSMEl0014D05r2	-	-	5e+0	At5g38950	germin-like protein-related	C.G.	S.X.	Please select
0.01	2e+0	32	Contig14569_at	Contig14569	-	-	3e-7	At3g13560	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig10808_at	Contig10808	-	-	6e+0	At5g18362	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig22641_at	Contig22641	-	-	3e+0	At5g07680	ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80)	C.G.	S.X.	Please select
0.03	2e+0	32	HF06I04r_x_at	HF06I04r	-	-	9e-1	At3g06590	transcription factor	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At4g31330	829260	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-1	36	Glycine max	GmaAffx.49121.1.S1_at	BE475167	-	-	9e+0	At5g44110	POP1	C.G.	S.X.	Please select
0.12	2e-10	67	Oryza sativa	Os07g0472400	AK105684.1	-	Protein kinase family protein	1e-6	At2g17530	protein kinase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.209992.1.S1_at	pmrna19712	hypothetical protein	-	3e+0	At5g05620	GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.58	0	767	Triticum aestivum	Ta.6343.1.S1_at	CD895131	-	-	3e+0	At3g04181	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	34	Vitis vinifera	1618029_at	CD802148	hypothetical protein LOC100256408	-	2e-1	At4g32090	galactosyltransferase	C.G.	S.X.	Please select
0.04	8e+0	30	Zea mays	Zm.901.1.A1_at	AY109251.1	-	-	1e+0	At2g36026	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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