CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig18078_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig18078_at Contig18078 - - 1e+0 At1g66180 aspartyl protease family protein S.X. H.G.
0.47 62.2 Contig7152_at Contig7152 - - 2e-34 At3g58600 - S.X. H.G.
0.46 61.0 Contig12253_at Contig12253 - - 2e+0 At2g47480 unknown protein S.X. H.G.
0.41 53.9 Contig24881_s_at Contig24881 - - 5e-2 At1g75340 zinc finger (CCCH-type) family protein S.X. H.G.
0.40 53.1 HD08D07r_s_at HD08D07r - - 9e+0 At5g53730 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein S.X. H.G.
0.40 53.1 Contig1641_at Contig1641 - - 1e-5 At5g20340 BG5 (beta-1,3-glucanase 5) S.X. H.G.
0.37 47.9 Contig14251_at Contig14251 - - 4e+0 At2g46170 reticulon family protein (RTNLB5) S.X. H.G.
0.36 47.1 Contig11010_at Contig11010 - - 4e-6 At3g11960 cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing protein S.X. H.G.
0.34 43.6 Contig5857_s_at Contig5857 - - 2e-1 At1g02965 unknown protein S.X. H.G.
0.32 40.3 Contig7044_at Contig7044 - - 4e-3 At5g42090 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.2 99.4 GSM68901 27 h control replicate 1 GSE3097 Barley1 salinity stress study
9.7 99.0 GSM68905 27 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study
8.1 98.7 GSM68892 3 h salt stressed replicate 1 GSE3097 Barley1 salinity stress study
8.0 98.7 GSM68893 3 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study
7.8 98.6 GSM68899 8 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study
7.7 98.6 GSM68902 27 h control replicate 2 GSE3097 Barley1 salinity stress study
7.5 98.6 GSM160744 drought control rep2 GSE6990 Barley drought stress
7.5 98.6 GSM68906 27 h salt stressed replicate 3 GSE3097 Barley1 salinity stress study
7.4 98.5 GSM68889 3 h control replicate 1 GSE3097 Barley1 salinity stress study
6.9 98.3 GSM281749 Genotype: Morex - rep2 GSE11182 Steptoe x Morex seedling leaf comparison
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 6e-1 34 Contig7196_s_at Contig7196 - - 3e-6 At1g13820 hydrolase, alpha/beta fold family protein C.G. S.X.
0.01 6e-1 34 Contig7196_at Contig7196 - - 3e-6 At1g13820 hydrolase, alpha/beta fold family protein C.G. S.X.
0.02 6e-1 34 Contig13785_at Contig13785 - - 7e-7 At2g21385 unknown protein C.G. S.X.
0.02 6e-1 34 Contig15737_at Contig15737 - - 1e-1 At3g30370 - C.G. S.X.
0.03 6e-1 34 HU14D24u_s_at HU14D24u - - 4e+0 At5g43510 - C.G. S.X.
0.02 2e+0 32 Contig26348_at Contig26348 - - 5e+0 At5g06040 self-incompatibility protein-related C.G. S.X.
0.03 2e+0 32 Contig25644_at Contig25644 - - 4e+0 At4g19003 VPS25 C.G. S.X.
0.03 2e+0 32 Contig15682_at Contig15682 - - 1e+1 At5g65300 unknown protein C.G. S.X.
0.02 2e+0 32 Contig11845_at Contig11845 - - 2e+0 At2g35850 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At1g66180 842933 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFOM - - - C.G. S.X.
0.04 4e-1 36 Glycine max HgAffx.24326.1.S1_at BF013523 - - 9e+0 At5g43285 - C.G. S.X.
0.19 6e-35 149 Oryza sativa Os01g0180200 AK101223.1 - Protein of unknown function DUF635 family protein 1e-2 At5g45110 NPR3 (NPR1-LIKE PROTEIN 3) C.G. S.X.
0.03 7e+0 32 Populus trichocarpa PtpAffx.222673.1.S1_at pmrna40227 NAC domain protein, IPR003441 - 4e-3 At5g64060 anac103 (Arabidopsis NAC domain containing protein 103) C.G. S.X.
0.10 7e-27 121 Triticum aestivum TaAffx.78372.1.S1_at CA744619 - - 8e+0 At5g48335 unknown protein C.G. S.X.
0.03 9e-2 36 Vitis vinifera 1609968_at CB972998 - - 9e-5 At5g67630 DNA helicase, putative C.G. S.X.
0.15 7e-22 103 Zea mays Zm.1353.1.A1_at AW862733 PCO069699 protein - 2e+0 At5g13900 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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