Gene omics information

Query gene ID	Contig18000_at
Gene name	knotted 1
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig18000_at	Contig18000	knotted 1	-	1e-33	At1g62360	STM (SHOOT MERISTEMLESS)	S.X.	H.G.	Please select
0.67	84.7	Contig7079_at	Contig7079	-	-	3e-3	At2g18980	peroxidase, putative	S.X.	H.G.	Please select
0.67	84.7	Contig3147_at	Contig3147	-	-	3e-4	At1g09940	HEMA2	S.X.	H.G.	Please select
0.63	80.3	Contig10718_at	Contig10718	-	-	2e-7	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	S.X.	H.G.	Please select
0.60	77.3	Contig25706_at	Contig25706	-	-	3e-1	At2g37000	TCP family transcription factor, putative	S.X.	H.G.	Please select
0.59	75.8	Contig23108_at	Contig23108	-	-	8e-1	At3g16280	DNA binding / transcription factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.4	99.9	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
28.6	99.8	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
23.0	99.8	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
21.1	99.7	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
19.7	99.7	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.3	99.4	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.8	99.1	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.1	98.4	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.9	98.3	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.5	98.2	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	1e-28	127	Contig14328_at	Contig14328	-	-	5e-8	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	C.G.	S.X.	Please select
0.02	1e-3	44	Contig4741_s_at	Contig4741	knotted 7	-	2e-12	At4g32040	KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5)	C.G.	S.X.	Please select
0.02	6e-3	42	Contig25238_at	Contig25238	knotted 6	-	4e-17	At1g62990	KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)	C.G.	S.X.	Please select
0.02	4e-1	36	Contig3821_s_at	Contig3821	-	-	3e-1	At5g34830	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	36	Contig23530_s_at	Contig23530	-	-	8e+0	At3g57072	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig9273_at	Contig9273	-	-	8e-1	At2g37470	histone H2B, putative	C.G.	S.X.	Please select
0.01	4e-1	36	Contig609_at	Contig609	-	-	7e+0	At2g04420	nucleic acid binding	C.G.	S.X.	Please select
0.02	1e+0	34	rbags5f04_at	rbags5f04	-	-	2e+0	At3g61678	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig3685_at	Contig3685	-	-	8e+0	At5g18970	AWPM-19-like membrane family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	1e-33	145	Arabidopsis thaliana	At1g62360	842534	STM (SHOOT MERISTEMLESS)	Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	7e-8	59	Glycine max	GmaAffx.72972.1.S1_at	BI316907	-	-	3e-27	At1g23380	KNAT6	C.G.	S.X.	Please select
0.53	1e-130	468	Oryza sativa	Os07g0129700	AF050181.1	-	OSH15 protein (Homeobox gene)	3e-19	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	2e-17	91	Populus trichocarpa	Ptp.5813.1.S2_at	CV234060	hypothetical protein	-	3e-53	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.48	6e-168	591	Triticum aestivum	TaAffx.91646.1.A1_at	BJ308816	-	-	2e-33	At1g62360	STM (SHOOT MERISTEMLESS)	C.G.	S.X.	Please select
0.15	3e-25	115	Vitis vinifera	1614094_at	CK138223.1	hypothetical protein LOC100255834	-	6e-43	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	C.G.	S.X.	Please select
0.45	0	728	Zea mays	Zm.271.1.S1_at	L44133.1	rough sheath1	-	4e-15	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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