CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig1797_x_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 92.5 Contig1797_x_at Contig1797 - - 1e-19 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) S.X. H.G.
0.91 98.1 Contig14223_at Contig14223 - - 2e+0 At3g61870 unknown protein S.X. H.G.
0.73 88.7 Contig6776_s_at Contig6776 - - 2e-3 At1g20850 XCP2 (xylem cysteine peptidase 2) S.X. H.G.
0.60 77.3 Contig13586_at Contig13586 - - 1e+0 At4g30660 hydrophobic protein, putative / low temperature and salt responsive protein, putative S.X. H.G.
0.35 45.1 Contig12443_at Contig12443 - - 7e-5 At1g54170 CID3 (CTC-Interacting Domain 3) S.X. H.G.
0.25 28.9 Contig13291_s_at Contig13291 - - 5e-1 At2g30340 LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.2 98.5 GSM261074 Albina e-16 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.9 98.3 GSM261068 Albina f-17 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5 98.2 GSM372963 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.9 97.9 GSM261069 Albina f-17 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6 97.7 GSM372964 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.3 97.4 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.9 97.1 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
4.6 96.8 GSM372962 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5 96.7 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.4 96.6 GSM261062 Xantha s-46 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.99 0 5081 Contig1797_at Contig1797 - - 1e-19 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.54 0 866 Contig1799_s_at Contig1799 - - 3e-13 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.49 0 805 Contig1805_s_at Contig1805 - - 9e-10 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.52 0 799 Contig1800_x_at Contig1800 - - 3e-17 At2g37040 pal1 (Phe ammonia lyase 1) C.G. S.X.
0.52 0 799 Contig1800_s_at Contig1800 - - 3e-17 At2g37040 pal1 (Phe ammonia lyase 1) C.G. S.X.
0.52 0 799 Contig1800_at Contig1800 - - 3e-17 At2g37040 pal1 (Phe ammonia lyase 1) C.G. S.X.
0.46 8e-170 597 Contig1795_at Contig1795 - - 3e-16 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.22 2e-155 549 HVSMEn0006O09f2_x_at HVSMEn0006O09f2 - - 3e+0 At5g26170 WRKY50 C.G. S.X.
0.44 9e-142 504 Contig1803_at Contig1803 - - 1e-19 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 1e-19 99 Arabidopsis thaliana At3g10340 820196 PAL4 (Phenylalanine ammonia-lyase 4) F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMA - - - C.G. S.X.
0.20 6e-19 97 Glycine max Gma.2266.1.S1_s_at BG839284 - - 2e-48 At2g37040 pal1 (Phe ammonia lyase 1) C.G. S.X.
0.72 0 2317 Oryza sativa Os02g0626400 BI807677 - Phenylalanine ammonia-lyase (EC 4.3.1.5) 1e-19 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.17 3e-11 71 Populus trichocarpa Ptp.3185.1.S1_x_at AF480620.1 phenylalanine amonnia lyase - 2e-33 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.85 0 3814 Triticum aestivum Ta.28736.1.S1_at AY005474.1 inducible phenylalanine ammonia-lyase - 3e-14 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.16 1e-38 161 Vitis vinifera 1610206_at CF511227 hypothetical protein LOC100241377 - 2e-29 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.59 3e-172 605 Zea mays Zm.15903.3.A1_at AY104679.1 hypothetical protein LOC100273579 - 4e-12 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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