Gene omics information

Query gene ID	Contig17974_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig17974_at	Contig17974	-	-	2e-3	At2g24550	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig17972_at	Contig17972	-	-	2e+0	At3g28990	unknown protein	S.X.	H.G.	Please select
0.33	42.6	HV_CEb0004J20f_s_at	HV_CEb0004J20f	-	-	2e+0	At5g63634	unknown protein	S.X.	H.G.	Please select
0.22	24.2	Contig1881_s_at	Contig1881	-	-	7e-1	At1g18650	PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3)	S.X.	H.G.	Please select
0.19	19.6	Contig8981_at	Contig8981	-	-	3e-10	At4g16430	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.14	12.9	Contig13145_at	Contig13145	-	-	6e+0	At1g24577	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.7	99.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
9.3	99.0	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
7.6	98.6	GSM398267	HS41-1_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.3	98.5	GSM398269	HS41-1_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.2	98.5	GSM398268	HS41-1_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.1	98.4	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.8	98.3	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1	98.0	GSM398274	Moroc9-75_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.9	97.9	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
5.9	97.9	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-4	46	Contig10945_at	Contig10945	-	-	3e+0	At5g24110	WRKY30	C.G.	S.X.	Please select
0.03	4e-3	42	Contig24290_at	Contig24290	-	-	3e-4	At3g50550	unknown protein	C.G.	S.X.	Please select
0.02	1e-2	40	Contig1648_at	Contig1648	-	-	3e-18	At1g66200	ATGSR2	C.G.	S.X.	Please select
0.02	1e-2	40	Contig20125_at	Contig20125	-	-	3e+0	At3g05540	-	C.G.	S.X.	Please select
0.02	1e-2	40	Contig9031_at	Contig9031	-	-	2e-4	At5g18270	ANAC087	C.G.	S.X.	Please select
0.02	1e-2	40	Contig19338_at	Contig19338	-	-	4e-8	At5g10480	PAS2 (PASTICCINO 2)	C.G.	S.X.	Please select
0.03	1e-2	40	Contig14932_at	Contig14932	-	-	8e-9	At2g28660	copper-binding family protein	C.G.	S.X.	Please select
0.03	1e-2	40	Contig13143_s_at	Contig13143	-	-	5e+0	At5g38565	-	C.G.	S.X.	Please select
0.03	1e-2	40	Contig13143_at	Contig13143	-	-	5e+0	At5g38565	-	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-3	44	Arabidopsis thaliana	At2g24550	816991	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-2	40	Glycine max	HgAffx.14259.1.A1_at	CB299882	-	-	1e-3	At1g67840	CSK (CHLOROPLAST SENSOR KINASE)	C.G.	S.X.	Please select
0.42	8e-60	232	Oryza sativa	Os01g0719600	AK070988.1	-	Heavy metal transport/detoxification proteindomain containing protein	2e-6	At3g24450	copper-binding family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-2	42	Populus trichocarpa	PtpAffx.135690.1.S1_at	CK105850	hypothetical protein	-	1e+0	At4g18940	cyclic phosphodiesterase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-2	40	Triticum aestivum	TaAffx.55593.1.S1_at	CA663890	-	-	2e-1	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	C.G.	S.X.	Please select
0.03	2e-3	42	Vitis vinifera	1607408_at	CF216013	-	-	2e-1	At1g10720	BSD domain-containing protein	C.G.	S.X.	Please select
0.12	3e-28	125	Zea mays	Zm.2581.1.A1_at	BM078550	-	-	4e-1	At4g15460	glycine-rich protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage