Gene omics information

Query gene ID	Contig1795_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig1795_at	Contig1795	-	-	3e-16	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	S.X.	H.G.	Please select
0.67	84.7	Contig1860_s_at	Contig1860	-	-	2e-3	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	S.X.	H.G.	Please select
0.57	74.9	Contig12551_at	Contig12551	-	-	5e-1	At2g24590	splicing factor, putative	S.X.	H.G.	Please select
0.46	61.0	Contig18743_at	Contig18743	-	-	1e+0	At4g12350	MYB42 (myb domain protein 42)	S.X.	H.G.	Please select
0.36	47.1	Contig24619_at	Contig24619	-	-	1e-1	At5g03455	CDC25	S.X.	H.G.	Please select
0.31	38.6	Contig18510_at	Contig18510	-	-	5e-11	At5g44240	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
48.6	99.9	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
35.7	99.9	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
33.5	99.9	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
25.7	99.8	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
24.8	99.8	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
19.1	99.7	GSM373003	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.0	99.4	GSM373002	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.3	99.0	GSM372948	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.9	98.7	GSM372944	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.8	98.6	GSM372980	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	0	807	Contig1800_x_at	Contig1800	-	-	3e-17	At2g37040	pal1 (Phe ammonia lyase 1)	C.G.	S.X.	Please select
0.54	0	807	Contig1800_s_at	Contig1800	-	-	3e-17	At2g37040	pal1 (Phe ammonia lyase 1)	C.G.	S.X.	Please select
0.54	0	807	Contig1800_at	Contig1800	-	-	3e-17	At2g37040	pal1 (Phe ammonia lyase 1)	C.G.	S.X.	Please select
0.66	0	793	Contig1805_s_at	Contig1805	-	-	9e-10	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.40	0	765	Contig1802_at	Contig1802	-	-	5e+0	At4g24265	unknown protein	C.G.	S.X.	Please select
0.63	0	765	Contig1799_s_at	Contig1799	-	-	3e-13	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.46	6e-170	597	Contig1797_x_at	Contig1797	-	-	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.46	6e-170	597	Contig1797_at	Contig1797	-	-	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.32	5e-93	341	Contig1803_at	Contig1803	-	-	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	3e-16	87	Arabidopsis thaliana	At3g10340	820196	PAL4 (Phenylalanine ammonia-lyase 4)	F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	6e-12	73	Glycine max	Gma.2266.1.S1_s_at	BG839284	-	-	2e-48	At2g37040	pal1 (Phe ammonia lyase 1)	C.G.	S.X.	Please select
0.52	0	848	Oryza sativa	Os04g0518400	AK067801.1	-	Phenylalanine ammonia-lyase 2 (EC 4.3.1.5)	4e-22	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	1e-49	198	Populus trichocarpa	PtpAffx.2272.1.S1_a_at	AY372451.1	phenylalanine amonnia lyase	-	1e-49	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.75	0	2016	Triticum aestivum	Ta.7022.1.S1_x_at	BJ281221	-	-	7e-11	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.17	4e-34	145	Vitis vinifera	1619642_at	CF512453	hypothetical protein LOC100241575	-	3e-28	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.48	2e-49	196	Zea mays	Zm.15903.3.A1_at	AY104679.1	hypothetical protein LOC100273579	-	4e-12	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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