CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig17954_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig17954_at Contig17954 - - 2e+0 At3g63050 unknown protein S.X. H.G.
0.83 94.0 Contig15846_at Contig15846 - - 3e+0 At5g27910 NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8) S.X. H.G.
0.80 92.5 Contig25390_at Contig25390 - - 6e+0 At1g06330 copper-binding family protein S.X. H.G.
0.50 66.9 EBro04_SQ003_G13_at EBro04_SQ003_G13 - - 2e+0 At5g44450 methyltransferase S.X. H.G.
0.44 58.9 Contig18560_at Contig18560 - - 2e-9 At3g24590 PLSP1 (plastidic type I signal peptidase 1) S.X. H.G.
0.29 35.5 Contig18058_at Contig18058 - - 7e+0 At2g32360 ubiquitin family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.7 99.6 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
13.8 99.5 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
11.9 99.3 GSM372954 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.6 99.2 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.1 98.7 GSM382232 Root_Hg1 GSE15295 Mercury toxicity in barley roots
6.4 98.1 GSM372951 genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.3 98.1 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
6.1 98.0 GSM372948 genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.0 97.9 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
6.0 97.9 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-5 48 Contig17142_at Contig17142 - - 1e-3 At2g19450 TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1) C.G. S.X.
0.03 2e-4 46 Contig6954_at Contig6954 - - 5e-1 At3g17330 ECT6 (evolutionarily conserved C-terminal region 6) C.G. S.X.
0.02 2e-4 46 Contig6953_at Contig6953 - - 3e+0 At5g24440 CID13 (CTC-Interacting Domain 13) C.G. S.X.
0.02 4e-3 42 Contig10699_at Contig10699 Mg-protoporphyrin IX - 2e-23 At1g08520 CHLD C.G. S.X.
0.02 6e-2 38 Contig12632_at Contig12632 - - 2e-1 At1g69700 ATHVA22C C.G. S.X.
0.02 2e-1 36 Contig9517_at Contig9517 - - 2e-45 At5g40200 DegP9 (DegP protease 9) C.G. S.X.
0.02 2e-1 36 Contig3120_at Contig3120 - - 4e-2 At4g20260 DREPP plasma membrane polypeptide family protein C.G. S.X.
0.02 9e-1 34 Contig20503_at Contig20503 - - 1e+0 At3g58810 MTPA2 (METAL TOLERANCE PROTEIN A2) C.G. S.X.
0.03 9e-1 34 Contig26104_at Contig26104 - - 1e+0 At3g52940 FK (FACKEL) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At3g63050 825480 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 6e-1 36 Glycine max Gma.2794.1.S1_at AI959914 - - 4e-1 At5g16120 hydrolase, alpha/beta fold family protein C.G. S.X.
0.37 1e-117 424 Oryza sativa Os01g0688200 NM_192110.1 - Alpha/beta hydrolase family protein 5e-4 At1g77420 hydrolase, alpha/beta fold family protein C.G. S.X.
0.05 3e-3 44 Populus trichocarpa PtpAffx.9498.1.A1_at CV259314 - - 9e-16 At1g77420 hydrolase, alpha/beta fold family protein C.G. S.X.
0.04 8e-3 42 Triticum aestivum TaAffx.107749.1.S1_at CA696009 - - 2e+0 At5g07910 leucine-rich repeat family protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1606755_at CD798651 hypothetical protein LOC100248417 - 1e-6 At2g30400 OFP2 (OVATE FAMILY PROTEIN 2) C.G. S.X.
0.30 7e-66 250 Zea mays Zm.3474.1.A1_at AY112601.1 - - 5e-5 At1g77420 hydrolase, alpha/beta fold family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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