Gene omics information

Query gene ID	Contig17900_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	S.X.	H.G.	Please select
0.60	77.3	9507414_R_4264-4644_at	9507414_R_4264-4644	-	-	1e+1	At5g06320	NHL3	S.X.	H.G.	Please select
0.55	72.0	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	S.X.	H.G.	Please select
0.53	69.7	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.50	66.9	Contig10097_at	Contig10097	-	-	4e-1	At3g16450	jacalin lectin family protein	S.X.	H.G.	Please select
0.40	53.1	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
74.1	100.0	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
72.2	100.0	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
44.5	99.9	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
30.5	99.9	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
26.0	99.8	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
16.8	99.6	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
16.1	99.6	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.6	98.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
8.4	98.8	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.4	98.5	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-2	38	Contig3533_at	Contig3533	-	-	3e+0	At1g53282	-	C.G.	S.X.	Please select
0.03	2e-1	36	Contig1075_at	Contig1075	-	-	7e+0	At4g36500	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig1075_x_at	Contig1075	-	-	7e+0	At4g36500	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig9681_at	Contig9681	-	-	3e-1	At1g62200	proton-dependent oligopeptide transport (POT) family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig9680_at	Contig9680	-	-	6e-2	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig8961_at	Contig8961	-	-	1e-1	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	C.G.	S.X.	Please select
0.02	7e-1	34	Contig9522_at	Contig9522	-	-	5e-15	At5g05630	amino acid permease family protein	C.G.	S.X.	Please select
0.03	7e-1	34	Contig14144_at	Contig14144	-	-	4e-2	At3g19900	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig19330_at	Contig19330	-	-	8e+0	At5g23420	HMGB6	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e+0	32	Arabidopsis thaliana	At4g05170	825865	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFBOM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-5	50	Glycine max	GmaAffx.17295.1.S1_at	BE660295	-	-	3e+0	At4g28140	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.04	2e-1	38	Oryza sativa	OsAffx.18096.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.203364.1.S1_at	pmrna6694	hypothetical protein	-	2e-1	At5g53830	VQ motif-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	5e-127	454	Triticum aestivum	TaAffx.74619.1.S1_at	CA721223	-	-	6e+0	At3g27660	OLEO4 (OLEOSIN 4)	C.G.	S.X.	Please select
0.02	7e+0	30	Vitis vinifera	1621904_at	CF568995	-	-	4e+0	At5g08070	TCP17 (TCP DOMAIN PROTEIN 17)	C.G.	S.X.	Please select
0.09	6e-1	34	Zea mays	ZmAffx.152.1.A1_at	AI667854	fasciclin-like arabinogalactan protein 8	-	5e+0	At5g07880	SNAP29	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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