Gene omics information

Query gene ID	Contig17872_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig17872_at	Contig17872	-	-	2e+0	At3g24730	catalytic	S.X.	H.G.	Please select
0.83	94.0	Contig21078_at	Contig21078	-	-	6e-1	At1g77765	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig9656_at	Contig9656	-	-	1e+0	At2g41225	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig4499_s_at	Contig4499	-	-	4e-18	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	S.X.	H.G.	Please select
0.63	80.3	Contig4498_at	Contig4498	-	-	2e-1	At1g28290	AGP31 (arabinogalactan-protein 31)	S.X.	H.G.	Please select
0.35	45.1	Contig1403_at	Contig1403	-	-	1e-2	At3g26430	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
67.5	100.0	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
64.7	100.0	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
49.3	99.9	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
47.1	99.9	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
18.4	99.7	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
17.9	99.7	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
15.8	99.6	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.0	99.5	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.4	99.3	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.5	99.2	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	4e-37	153	Contig17873_at	Contig17873	-	-	4e-1	At4g17490	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)	C.G.	S.X.	Please select
0.02	3e-1	34	Contig6841_at	Contig6841	-	-	6e-1	At3g59980	tRNA-binding region domain-containing protein	C.G.	S.X.	Please select
0.03	3e-1	34	Contig1334_at	Contig1334	-	-	5e-1	At3g28590	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Contig4541_at	Contig4541	-	-	1e-4	At5g63980	SAL1	C.G.	S.X.	Please select
0.03	1e+0	32	Contig5410_at	Contig5410	-	-	1e-1	At3g49570	LSU3 (RESPONSE TO LOW SULFUR 3)	C.G.	S.X.	Please select
0.02	1e+0	32	Contig14469_at	Contig14469	-	-	6e-7	At3g21250	ATMRP6	C.G.	S.X.	Please select
0.02	1e+0	32	Contig14371_at	Contig14371	-	-	3e-5	At1g61900	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	HVSMEg0005M23r2_at	HVSMEg0005M23r2	-	-	2e-1	At3g57730	protein kinase, putative	C.G.	S.X.	Please select
0.02	4e+0	30	Contig19722_at	Contig19722	-	-	3e-2	At2g37210	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	32	Arabidopsis thaliana	At3g24730	822071	catalytic	F:catalytic activity;P:mitosis;C:spliceosome;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e+0	32	Glycine max	GmaAffx.69894.1.A1_at	BU549752	-	-	2e-1	At1g65570	polygalacturonase, putative / pectinase, putative	C.G.	S.X.	Please select
0.14	1e-15	83	Oryza sativa	Os04g0547500	9632.m04453	-	-	5e-4	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+1	30	Populus trichocarpa	PtpAffx.216882.1.S1_at	pmrna31928	-	-	1e+1	At2g06850	EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	6e-1	34	Triticum aestivum	TaAffx.27151.1.S1_at	CA680558	-	-	4e+0	At1g15220	CCMH	C.G.	S.X.	Please select
0.04	1e+1	28	Vitis vinifera	1617793_at	CA817090	-	-	4e+0	At3g05425	unknown protein	C.G.	S.X.	Please select
0.06	4e+0	30	Zea mays	ZmAffx.1074.1.A1_at	AI947680	-	-	1e+1	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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