CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig17857_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig17857_at Contig17857 - - 4e-5 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) S.X. H.G.
0.55 72.0 HVSMEm0011M01r2_at HVSMEm0011M01r2 - - 2e+1 At4g18590 - S.X. H.G.
0.40 53.1 EBes01_SQ002_D15_at EBes01_SQ002_D15 - - 5e-2 At1g15370 - S.X. H.G.
0.36 47.1 Contig18641_at Contig18641 - - 5e-4 At1g68850 peroxidase, putative S.X. H.G.
0.23 26.1 Contig25564_at Contig25564 - - 7e-1 At3g30220 unknown protein S.X. H.G.
0.14 12.9 HVSMEl0001K15r2_at HVSMEl0001K15r2 - - 2e+0 At2g43445 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
41.9 99.9 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
36.2 99.9 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
24.8 99.8 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
13.7 99.5 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
12.7 99.4 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.2 99.1 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.5 98.8 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.3 98.8 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.0 98.7 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.7 98.6 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 8e-2 38 Contig3097_at Contig3097 - - 4e+0 At5g46730 glycine-rich protein C.G. S.X.
0.02 8e-2 38 Contig1962_s_at Contig1962 - - 3e-20 At2g40590 40S ribosomal protein S26 (RPS26B) C.G. S.X.
0.02 8e-2 38 Contig1962_at Contig1962 - - 3e-20 At2g40590 40S ribosomal protein S26 (RPS26B) C.G. S.X.
0.01 3e-1 36 Contig8236_at Contig8236 - - 5e-1 At1g54780 thylakoid lumen 18.3 kDa protein C.G. S.X.
0.02 3e-1 36 Contig733_at Contig733 - - 8e-19 At3g04840 40S ribosomal protein S3A (RPS3aA) C.G. S.X.
0.02 1e+0 34 Contig10456_at Contig10456 - - 1e+1 At5g19473 - C.G. S.X.
0.01 1e+0 34 Contig8361_at Contig8361 - - 5e-4 At5g62190 PRH75 C.G. S.X.
0.01 1e+0 34 Contig13400_s_at Contig13400 - - 6e-5 At3g04350 unknown protein C.G. S.X.
0.01 1e+0 34 Contig2916_at Contig2916 UDP-D-glucuronate decarboxylase - 1e-33 At2g47650 UXS4 (UDP-XYLOSE SYNTHASE 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 4e-5 50 Arabidopsis thaliana At3g02600 821299 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) Encodes phosphatidic acid phosphatase. Expressed during germination. - - - C.G. S.X.
0.05 6e-8 59 Glycine max GmaAffx.30344.1.S1_at AW349341 - - 5e-6 At2g01180 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1) C.G. S.X.
0.41 1e-114 414 Oryza sativa Os01g0139600 AK073130.1 - Lipid phosphate phosphatase 2 (EC 3.1.3.-)(AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2)(Prenyl diphosphate phosphatase) 3e-3 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) C.G. S.X.
0.10 3e-13 77 Populus trichocarpa PtpAffx.208919.1.S1_at pmrna17686 hypothetical protein - 8e-3 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) C.G. S.X.
0.50 0 716 Triticum aestivum TaAffx.83708.1.S1_at CA653428 - - 1e-3 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) C.G. S.X.
0.06 2e-4 46 Vitis vinifera 1621834_at BQ794561 hypothetical protein LOC100254175 - 2e-5 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) C.G. S.X.
0.07 5e-6 52 Zea mays Zm.17578.1.A1_at CK368635 - - 2e+0 At4g32530 vacuolar ATP synthase, putative / V-ATPase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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