Gene omics information

Query gene ID	Contig17823_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig17823_at	Contig17823	-	-	2e+0	At5g52720	metal ion binding	S.X.	H.G.	Please select
0.67	84.7	Contig10881_at	Contig10881	-	-	4e+0	At5g07470	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	S.X.	H.G.	Please select
0.57	74.9	Contig16054_at	Contig16054	-	-	4e-1	At1g06830	glutaredoxin family protein	S.X.	H.G.	Please select
0.50	66.9	Contig24303_at	Contig24303	-	-	3e-1	At3g09800	protein binding	S.X.	H.G.	Please select
0.40	53.1	Contig13652_at	Contig13652	-	-	8e-7	At1g32090	early-responsive to dehydration protein-related / ERD protein-related	S.X.	H.G.	Please select
0.20	21.1	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.4	98.5	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.0	97.2	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.0	97.2	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.6	96.8	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.2	96.3	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	8e-8	57	Contig9134_at	Contig9134	-	-	4e-22	At4g32600	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.07	3e-7	56	Contig17951_at	Contig17951	-	-	3e-8	At4g32600	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e-3	44	Contig11273_at	Contig11273	-	-	2e-13	At1g63170	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	7e-2	38	Contig14308_at	Contig14308	-	-	5e-10	At5g07100	WRKY26	C.G.	S.X.	Please select
0.02	3e-1	36	Contig8683_at	Contig8683	-	-	5e-1	At1g58070	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig23823_at	Contig23823	-	-	1e+0	At1g23420	INO (INNER NO OUTER)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig5933_at	Contig5933	-	-	2e-6	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select
0.02	1e+0	34	HVSMEg0015H13r2_s_at	HVSMEg0015H13r2	-	-	2e+0	At3g25110	AtFaTA (Arabidopsis FatA acyl-ACP thioesterase)	C.G.	S.X.	Please select
0.02	1e+0	34	HVSMEg0015H13r2_at	HVSMEg0015H13r2	-	-	2e+0	At3g25110	AtFaTA (Arabidopsis FatA acyl-ACP thioesterase)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g52720	835349	metal ion binding	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e-1	36	Glycine max	HgAffx.13668.1.S1_at	CB374314	-	-	6e-1	At5g49710	unknown protein	C.G.	S.X.	Please select
0.34	0	688	Oryza sativa	Os09g0323100	AK069027.1	-	Zn-finger, RING domain containing protein	1e-3	At1g80400	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	8e-1	36	Populus trichocarpa	PtpAffx.25004.5.A1_a_at	CV239237	hypothetical protein	-	7e-24	At3g11200	AL2 (ALFIN-LIKE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-4	48	Triticum aestivum	TaAffx.5323.1.S1_at	BJ319065	-	-	4e-6	At4g32600	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.05	1e-2	40	Vitis vinifera	1620739_s_at	BQ800573	hypothetical protein LOC100245718	-	2e-8	At4g32600	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.06	1e-6	54	Zea mays	Zm.5393.1.S1_at	CF056132	-	-	2e-26	At1g80400	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage