Gene omics information

Query gene ID	Contig1774_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.65	81.4	Contig1774_at	Contig1774	-	-	2e-72	At3g14420	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	S.X.	H.G.	Please select
0.44	58.9	Contig6123_at	Contig6123	-	-	3e+0	At5g24105	AGP41 (ARABINOGALACTAN-PROTEIN 41)	S.X.	H.G.	Please select
0.43	56.4	Contig11405_at	Contig11405	-	-	2e-9	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	S.X.	H.G.	Please select
0.43	56.4	Contig6466_at	Contig6466	-	-	5e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	S.X.	H.G.	Please select
0.39	50.5	Contig167_x_at	Contig167	-	-	2e-8	At1g08880	H2AXA	S.X.	H.G.	Please select
0.39	50.5	Contig14154_at	Contig14154	-	-	2e+0	At1g60320	Toll-Interleukin-Resistance (TIR) domain-containing protein	S.X.	H.G.	Please select
0.37	47.9	Contig2510_at	Contig2510	-	-	6e-4	At3g05550	hypoxia-responsive family protein	S.X.	H.G.	Please select
0.33	42.6	Contig9785_at	Contig9785	-	-	9e-4	At4g25620	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.33	42.6	Contig17958_at	Contig17958	-	-	2e+0	At5g40370	glutaredoxin, putative	S.X.	H.G.	Please select
0.30	37.0	Contig11372_at	Contig11372	-	-	5e-7	At3g27100	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.7	98.3	GSM363460	Control (C) - rep1	GSE14521	Late response to boron toxicity in barley leaves
6.4	98.1	GSM363464	5 mM B(OH)3 treatment (5B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
5.9	97.9	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
5.7	97.7	GSM363462	Control (C) - rep3	GSE14521	Late response to boron toxicity in barley leaves
5.6	97.7	GSM363466	10 mM B(OH)3 treatment (10B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
5.6	97.7	GSM372939	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.2	97.4	GSM281747	Genotype: Steptoe - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
4.9	97.1	GSM281746	Genotype: Steptoe - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
4.9	97.1	GSM281749	Genotype: Morex - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
4.9	97.1	GSM281750	Genotype: Morex - rep3	GSE11182	Steptoe x Morex seedling leaf comparison

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	8e-61	234	Contig8976_at	Contig8976	-	-	1e-20	At3g14420	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	C.G.	S.X.	Please select
0.12	2e-12	73	Contig1771_s_at	Contig1771	-	-	1e+0	At2g20616	unknown protein	C.G.	S.X.	Please select
0.02	3e-2	40	Contig11930_at	Contig11930	-	-	4e-1	At3g57900	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	38	rbags16c12_at	rbags16c12	-	-	4e+0	At4g33980	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	38	Contig14738_at	Contig14738	-	-	6e-1	At2g18110	elongation factor 1-beta, putative / EF-1-beta, putative	C.G.	S.X.	Please select
0.02	1e-1	38	Contig8825_at	Contig8825	-	-	2e+0	Atmg00920	-	C.G.	S.X.	Please select
0.02	1e-1	38	Contig8826_at	Contig8826	-	-	4e+0	At3g58830	haloacid dehalogenase (HAD) superfamily protein	C.G.	S.X.	Please select
0.02	1e-1	38	rbags16c12_s_at	rbags16c12	-	-	4e+0	At4g33980	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	36	Contig816_s_at	Contig816	-	-	6e-4	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	2e-72	274	Arabidopsis thaliana	At3g14420	820665	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	F:glycolate oxidase activity;P:metabolic process;C:in 7 components;OBFMPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	2e-67	258	Glycine max	Gma.7309.2.S1_s_at	CD408975	Peroxisomal glycolate oxidase	-	4e-148	At3g14415	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	C.G.	S.X.	Please select
0.61	0	1358	Oryza sativa	Os07g0152900	AK062433.1	-	-	2e-11	At3g14420	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	3e-47	190	Populus trichocarpa	Ptp.6667.1.S1_s_at	CX185361	hypothetical protein	-	9e-108	At3g14415	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.79	0	1992	Triticum aestivum	Ta.28197.1.S1_at	BQ620267	-	-	2e-60	At3g14420	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	C.G.	S.X.	Please select
0.26	1e-67	256	Vitis vinifera	1622249_at	CA817903	glycolate oxidase-like	-	6e-153	At3g14420	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	C.G.	S.X.	Please select
0.34	5e-25	115	Zea mays	Zm.2298.2.A1_a_at	BQ619139	hypothetical protein LOC100192687	-	1e-21	At3g14420	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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