CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig17733_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig17733_at Contig17733 - - 4e-1 At3g02750 protein phosphatase 2C family protein / PP2C family protein S.X. H.G.
0.55 72.0 rbah34p08_s_at rbah34p08 - - 3e-1 At1g29500 auxin-responsive protein, putative S.X. H.G.
0.47 62.2 Contig18942_at Contig18942 - - 5e-1 At2g18530 protein kinase family protein S.X. H.G.
0.40 53.1 Contig25108_at Contig25108 - - 5e+0 At3g43740 leucine-rich repeat family protein S.X. H.G.
0.24 27.2 Contig10949_at Contig10949 - - 4e-6 At1g65730 YSL7 (YELLOW STRIPE LIKE 7) S.X. H.G.
0.17 16.9 Contig4560_at Contig4560 - - 2e-1 At1g29000 heavy-metal-associated domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.5 98.8 GSM372981 genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.5 98.2 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.4 97.5 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.4 97.5 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.3 97.4 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2 97.4 GSM261078 Albina e-16 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1 96.2 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1 96.2 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1 96.2 GSM372987 genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9 95.8 GSM372964 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 36 Contig13989_at Contig13989 - - 3e-12 At5g39660 CDF2 (CYCLING DOF FACTOR 2) C.G. S.X.
0.03 2e-1 36 HF14N13r_at HF14N13r - - 3e-1 At5g10350 polyadenylate-binding protein family protein / PABP family protein C.G. S.X.
0.02 2e-1 36 Contig11838_at Contig11838 - - 4e-2 At3g63320 protein phosphatase 2C-related / PP2C-related C.G. S.X.
0.01 7e-1 34 Contig7630_at Contig7630 - - 1e-12 At5g56290 PEX5 (PEROXIN 5) C.G. S.X.
0.01 7e-1 34 Contig4267_at Contig4267 - - 2e-8 At4g00830 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 7e-1 34 Contig4043_at Contig4043 - - 2e+0 At5g23090 NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13) C.G. S.X.
0.03 7e-1 34 Contig1325_s_at Contig1325 - - 1e+0 At5g33393 unknown protein C.G. S.X.
0.02 7e-1 34 Contig11317_at Contig11317 - - 3e-9 At2g37860 LCD1 (LOWER CELL DENSITY 1) C.G. S.X.
0.02 7e-1 34 Contig8895_at Contig8895 - - 7e-4 At1g19600 pfkB-type carbohydrate kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 36 Arabidopsis thaliana At3g02750 820909 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:chloroplast;PMOFBV - - - C.G. S.X.
0.03 5e-1 36 Glycine max GmaAffx.55336.1.S1_at BI470865 - - 2e-2 At5g07600 oleosin / glycine-rich protein C.G. S.X.
0.17 3e-22 107 Oryza sativa OsAffx.13351.1.S1_at - - - 0 C.G. S.X.
0.03 1e-1 38 Populus trichocarpa Ptp.6875.1.S1_s_at CV234546 hypothetical protein - 1e-22 At1g31812 ACBP6 (acyl-CoA-binding protein 6) C.G. S.X.
0.74 0 967 Triticum aestivum Ta.13226.1.S1_at BJ300051 - - 1e-1 At3g11850 unknown protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1622095_s_at BQ795159 hypothetical protein LOC100247888 - 5e+0 At4g39795 senescence-associated protein-related C.G. S.X.
0.25 2e-28 125 Zea mays Zm.16978.1.A1_at CF646243 hypothetical protein LOC100275636 - 1e+0 At4g10800 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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