Gene omics information

Query gene ID	Contig17728_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig17728_at	Contig17728	-	-	2e+0	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	S.X.	H.G.	Please select
0.35	45.1	HY08N07u_s_at	HY08N07u	-	-	4e+0	At3g28870	-	S.X.	H.G.	Please select
0.32	40.3	Contig1502_s_at	Contig1502	-	-	9e-1	At5g63230	-	S.X.	H.G.	Please select
0.29	35.5	Contig18044_at	Contig18044	-	-	1e+0	At3g47070	unknown protein	S.X.	H.G.	Please select
0.26	30.4	Contig11017_at	Contig11017	-	-	1e+0	At1g15840	unknown protein	S.X.	H.G.	Please select
0.25	28.9	Contig9787_at	Contig9787	-	-	4e+0	At2g27505	-	S.X.	H.G.	Please select
0.23	26.1	Contig14329_at	Contig14329	-	-	4e-4	At1g04870	PRMT10	S.X.	H.G.	Please select
0.17	16.9	Contig8718_at	Contig8718	-	-	7e+0	Atmg00150	-	S.X.	H.G.	Please select
0.17	16.9	Contig12767_at	Contig12767	-	-	2e+0	At4g24660	ATHB22 (HOMEOBOX PROTEIN 22)	S.X.	H.G.	Please select
0.14	12.9	Contig4131_at	Contig4131	-	-	2e-23	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.7	99.9	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
38.7	99.9	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
15.7	99.6	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
14.3	99.5	GSM281750	Genotype: Morex - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
12.9	99.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
12.5	99.4	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
12.5	99.4	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
11.1	99.2	GSM261029	ABA-Late-rep3	GSE10328	ABA experiment
9.5	99.0	GSM281746	Genotype: Steptoe - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
8.7	98.9	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	2e-23	109	Contig17605_at	Contig17605	-	-	2e+0	At5g60090	protein kinase family protein	C.G.	S.X.	Please select
0.03	2e-4	46	Contig11293_at	Contig11293	-	-	9e-3	At1g48480	RKL1	C.G.	S.X.	Please select
0.04	2e-4	46	Contig25245_at	Contig25245	-	-	1e+0	At3g08680	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.03	9e-4	44	HS16P03u_at	HS16P03u	-	-	5e-3	At5g62460	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	9e-4	44	Contig20099_at	Contig20099	-	-	2e-2	At2g15670	-	C.G.	S.X.	Please select
0.04	4e-3	42	Contig13217_at	Contig13217	-	-	2e-3	At1g11340	S-locus lectin protein kinase family protein	C.G.	S.X.	Please select
0.02	4e-3	42	Contig24236_at	Contig24236	-	-	3e-2	At5g47070	protein kinase, putative	C.G.	S.X.	Please select
0.02	4e-3	42	Contig9237_at	Contig9237	-	-	6e-8	At1g07570	APK1A	C.G.	S.X.	Please select
0.02	1e-2	40	Contig10245_at	Contig10245	-	-	2e+0	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At3g21510	821705	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	38	Glycine max	PsAffx.CL67Contig1_at	PsAffx.CL67Contig1	-	-	4e-1	At2g44120	60S ribosomal protein L7 (RPL7C)	C.G.	S.X.	Please select
0.55	0	841	Oryza sativa	Os.12804.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	PtpAffx.203242.1.S1_x_at	pmrna6424	hypothetical protein	-	7e-2	At1g77510	ATPDIL1-2 (PDI-LIKE 1-2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	5e-7	56	Triticum aestivum	Ta.6690.2.A1_x_at	BJ307014	-	-	3e-1	At1g24145	unknown protein	C.G.	S.X.	Please select
0.02	8e+0	30	Vitis vinifera	1622474_at	CF373640	-	-	3e+0	At1g54445	-	C.G.	S.X.	Please select
0.13	4e-15	81	Zea mays	Zm.19324.1.A1_at	CK986141	hypothetical protein LOC100279823	-	6e-3	At3g13065	SRF4 (STRUBBELIG-RECEPTOR FAMILY 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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