Gene omics information

Query gene ID	Contig17621_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	74.9	Contig17621_at	Contig17621	-	-	1e-1	At1g73310	scpl4 (serine carboxypeptidase-like 4)	S.X.	H.G.	Please select
0.61	78.7	Contig2632_s_at	Contig2632	-	-	4e+0	At5g37550	unknown protein	S.X.	H.G.	Please select
0.61	78.7	Contig4707_x_at	Contig4707	-	-	5e+0	At2g35900	unknown protein	S.X.	H.G.	Please select
0.61	78.7	Contig4710_at	Contig4710	-	-	3e-1	At2g17560	HMGB4 (HIGH MOBILITY GROUP B 4)	S.X.	H.G.	Please select
0.60	77.3	Contig26310_at	Contig26310	-	-	5e+0	At5g38800	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)	S.X.	H.G.	Please select
0.50	66.9	Contig8661_at	Contig8661	-	-	1e+0	At3g48298	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.5	99.8	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
21.3	99.7	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
20.8	99.7	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
20.3	99.7	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
19.4	99.7	GSM160815	drought control rep3	GSE6990	Barley drought stress
16.4	99.6	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
15.6	99.6	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
13.6	99.5	GSM261039	Dicktoo-deacclimation-rep1	GSE10329	Low temperature stress in cv. Dicktoo
13.5	99.5	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
11.9	99.3	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	2e-118	424	HV_CEb0015D22r2_at	HV_CEb0015D22r2	-	-	3e-1	At3g53570	AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)	C.G.	S.X.	Please select
0.07	2e-7	56	HK04D23r_at	HK04D23r	-	-	2e+1	At3g53580	diaminopimelate epimerase family protein	C.G.	S.X.	Please select
0.04	8e-1	34	Contig20187_s_at	Contig20187	-	-	7e-3	At5g09640	SCPL19	C.G.	S.X.	Please select
0.05	8e-1	34	HVSMEl0015K12f_at	HVSMEl0015K12f	-	-	4e+0	At5g24370	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig25618_at	Contig25618	-	-	4e-1	At3g43120	auxin-responsive protein-related	C.G.	S.X.	Please select
0.01	8e-1	34	Contig3615_at	Contig3615	-	-	6e-15	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig12778_at	Contig12778	-	-	2e-3	At1g76730	5-formyltetrahydrofolate cyclo-ligase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig16356_at	Contig16356	-	-	2e+0	At5g19200	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig24850_at	Contig24850	-	-	5e+0	At2g12462	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-1	38	Arabidopsis thaliana	At1g73310	843665	scpl4 (serine carboxypeptidase-like 4)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	4e-5	50	Glycine max	Gma.2669.1.S1_at	CA935964	-	-	4e-6	At5g09640	SCPL19	C.G.	S.X.	Please select
0.16	3e-16	87	Oryza sativa	Os.20341.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.216396.1.S1_at	pmrna31154	hypothetical protein	-	1e-14	At5g36180	scpl1 (serine carboxypeptidase-like 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.41	2e-21	103	Triticum aestivum	Ta.3507.2.S1_a_at	BJ265270	-	-	1e+0	At4g29590	methyltransferase	C.G.	S.X.	Please select
0.06	2e-3	42	Vitis vinifera	1607463_at	CB343440	hypothetical protein LOC100255717	-	1e-12	At3g12203	scpl17 (serine carboxypeptidase-like 17)	C.G.	S.X.	Please select
0.05	3e-3	42	Zea mays	Zm.3150.1.S1_at	BM080786	hypothetical protein LOC100216996	-	1e-3	At3g12203	scpl17 (serine carboxypeptidase-like 17)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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