Gene omics information

Query gene ID	Contig17530_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig17530_at	Contig17530	-	-	6e-3	At4g00380	XH/XS domain-containing protein / XS zinc finger domain-containing protein	S.X.	H.G.	Please select
0.91	98.1	Contig1752_s_at	Contig1752	-	-	3e-7	At1g15270	-	S.X.	H.G.	Please select
0.80	92.5	Contig3051_s_at	Contig3051	-	-	8e-6	At3g11930	universal stress protein (USP) family protein	S.X.	H.G.	Please select
0.73	88.7	Contig21476_at	Contig21476	-	-	5e+0	At5g39581	unknown protein	S.X.	H.G.	Please select
0.31	38.6	Contig21980_at	Contig21980	-	-	1e-1	At3g24450	copper-binding family protein	S.X.	H.G.	Please select
0.25	28.9	Contig25140_at	Contig25140	-	-	1e-10	At2g47570	60S ribosomal protein L18 (RPL18A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.4	99.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.1	98.9	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.1	98.9	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.0	97.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.5	96.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Contig16495_at	Contig16495	-	-	4e-1	At1g28280	VQ motif-containing protein	C.G.	S.X.	Please select
0.03	7e-1	34	Contig7989_at	Contig7989	-	-	4e+0	At4g29020	glycine-rich protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig11840_s_at	Contig11840	-	-	3e-2	At2g25720	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig14429_at	Contig14429	-	-	2e-12	At3g47690	ATEB1A	C.G.	S.X.	Please select
0.02	7e-1	34	Contig14429_s_at	Contig14429	-	-	2e-12	At3g47690	ATEB1A	C.G.	S.X.	Please select
0.01	7e-1	34	Contig5157_at	Contig5157	-	-	2e-29	At3g11830	chaperonin, putative	C.G.	S.X.	Please select
0.03	3e+0	32	HU08H20r_s_at	HU08H20r	-	-	9e-1	At3g63170	chalcone isomerase	C.G.	S.X.	Please select
0.02	3e+0	32	Contig7792_s_at	Contig7792	-	-	3e-2	At4g24590	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig15675_at	Contig15675	-	-	2e+0	At1g63910	AtMYB103 (myb domain protein 103)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-3	42	Arabidopsis thaliana	At4g00380	828016	XH/XS domain-containing protein / XS zinc finger domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	GmaAffx.71257.1.S1_at	BI426559	-	-	9e-7	At3g14810	MSL5 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 5)	C.G.	S.X.	Please select
0.23	3e-83	309	Oryza sativa	Os01g0147700	AK066686.1	-	XS zinc finger domain containing protein	6e-9	At4g00380	XH/XS domain-containing protein / XS zinc finger domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Populus trichocarpa	PtpAffx.125439.1.S1_s_at	DN497329	chromatin remodeling complex subunit	-	9e-14	At2g02090	ETL1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.69	2e-157	555	Triticum aestivum	Ta.24557.1.A1_at	BJ237592	-	-	2e+0	At4g05497	F-box family protein	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1619382_at	CA817878	hypothetical protein LOC100251065	-	2e-27	At1g48240	ATNPSN12	C.G.	S.X.	Please select
0.26	1e-20	99	Zea mays	Zm.2666.1.A1_at	AW066791	-	-	1e-5	At4g01780	XH/XS domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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