Gene omics information

Query gene ID	Contig17521_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig17521_at	Contig17521	-	-	2e+0	At5g40930	TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)	S.X.	H.G.	Please select
0.55	72.0	HV06K22u_at	HV06K22u	-	-	9e+0	At3g49645	unknown protein	S.X.	H.G.	Please select
0.50	66.9	HO09D01S_at	HO09D01S	-	-	2e-1	Atmg00990	-	S.X.	H.G.	Please select
0.50	66.9	HV10P15u_at	HV10P15u	-	-	3e+0	At2g28725	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig6014_at	Contig6014	-	-	5e+0	At5g38540	jacalin lectin family protein	S.X.	H.G.	Please select
0.25	28.9	Contig13634_at	Contig13634	-	-	1e+0	At4g33565	protein binding / zinc ion binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
41.7	99.9	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
34.7	99.9	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
22.1	99.8	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
20.7	99.7	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
17.4	99.6	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
15.3	99.6	GSM373001	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
15.2	99.5	GSM373002	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.6	99.5	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.8	99.5	GSM373009	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.4	99.4	GSM372988	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	7e-162	569	HD04N07u_at	HD04N07u	-	-	4e+0	At5g52940	unknown protein	C.G.	S.X.	Please select
0.25	2e-32	139	Contig12486_at	Contig12486	-	-	1e+0	At5g51812	unknown protein	C.G.	S.X.	Please select
0.29	2e-10	65	Contig24823_at	Contig24823	-	-	4e-1	At2g28810	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.11	2e-4	46	rbaal1e15_at	rbaal1e15	-	-	9e-1	At4g20470	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	HVSMEa0007F11r2_at	HVSMEa0007F11r2	-	-	8e-2	At1g73700	MATE efflux family protein	C.G.	S.X.	Please select
0.01	9e-1	34	Contig3869_at	Contig3869	-	-	1e-3	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig15031_at	Contig15031	-	-	5e-1	At3g09180	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig13349_at	Contig13349	-	-	4e-17	At2g20130	LCV1 (LIKE COV 1)	C.G.	S.X.	Please select
0.02	3e+0	32	HVSMEc0014A20r2_at	HVSMEc0014A20r2	-	-	1e+0	At3g56580	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g40930	834094	TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)	Form of TOM20, which is a component of the TOM complex involved in transport of nuclear-encoded mitochondrial proteins	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	GmaAffx.78045.2.S1_at	BM269628	-	-	9e-38	At3g20540	POLGAMMA1 (polymerase gamma 1)	C.G.	S.X.	Please select
0.02	4e+0	34	Oryza sativa	Os06g0670900	9634.m04466	-	-	1e-7	At3g44720	ADT4 (arogenate dehydratase 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	PtpAffx.215632.1.S1_at	pmrna29924	hypothetical protein	-	2e-2	At4g10950	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	5e-115	414	Triticum aestivum	Ta.4958.1.A1_at	BJ274548	-	-	1e-1	At2g39970	peroxisomal membrane protein (PMP36)	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1622685_at	CD012282	hypothetical protein LOC100264650	-	1e-12	At5g56760	ATSERAT1	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.18280.1.S1_at	BG840762	hypothetical protein LOC100193238	-	2e+0	At5g42797	LCR28 (Low-molecular-weight cysteine-rich 28)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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