Gene omics information

Query gene ID	Contig17511_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	63.2	Contig17511_at	Contig17511	-	-	8e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.55	72.0	Contig11259_at	Contig11259	-	-	8e-4	At5g17230	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	S.X.	H.G.	Please select
0.46	61.0	Contig3873_at	Contig3873	-	-	3e-20	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	S.X.	H.G.	Please select
0.38	49.5	Contig24940_at	Contig24940	-	-	1e+0	At4g12000	-	S.X.	H.G.	Please select
0.33	42.6	Contig10037_at	Contig10037	-	-	9e-1	At5g23760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.33	42.6	Contig2821_at	Contig2821	-	-	1e-72	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.6	99.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.3	98.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.5	98.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.7	96.9	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.6	95.3	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Contig8756_at	Contig8756	-	-	2e+0	At1g76150	maoC-like dehydratase domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig8754_at	Contig8754	-	-	1e+0	At1g76150	maoC-like dehydratase domain-containing protein	C.G.	S.X.	Please select
0.02	4e+0	32	Contig10919_s_at	Contig10919	-	-	3e-1	At5g15760	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	C.G.	S.X.	Please select
0.01	4e+0	32	Contig8475_at	Contig8475	-	-	3e+0	At3g15670	late embryogenesis abundant protein, putative / LEA protein, putative	C.G.	S.X.	Please select
0.02	4e+0	32	Contig13982_at	Contig13982	-	-	2e-4	At4g15480	UGT84A1	C.G.	S.X.	Please select
0.02	4e+0	32	Contig11939_at	Contig11939	-	-	5e-3	At5g58110	ATPase activator/ chaperone binding	C.G.	S.X.	Please select
0.02	4e+0	32	Contig8956_at	Contig8956	-	-	7e-3	At1g64900	CYP89A2 (CYTOCHROME P450 89A2)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig11790_at	Contig11790	-	-	2e-8	At4g00790	-	C.G.	S.X.	Please select
0.02	4e+0	32	Contig11000_at	Contig11000	-	-	2e+0	At4g18620	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e+0	32	Arabidopsis thaliana	At5g55750	835669	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	36	Glycine max	PsAffx.C33000022_at	PsAffx.C33000022	-	-	8e-1	At5g04170	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.03	7e-14	79	Oryza sativa	Os04g0636000	AK065639.1	-	SPla/RYanodine receptor SPRY domain containingprotein	1e+0	At1g62770	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.7005.1.S1_at	CK105399	-	-	3e-1	At1g42480	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	7e-25	115	Triticum aestivum	Ta.11696.1.A1_at	BQ170612	-	-	6e+0	At3g05290	PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1614585_at	CB918636	-	-	7e-55	At2g32600	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	ZmAffx.757.1.A1_at	AI745972	-	-	3e+0	At4g32960	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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