Gene omics information

Query gene ID	Contig17421_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.51	67.5	Contig17421_at	Contig17421	-	-	4e+0	At1g45248	-	S.X.	H.G.	Please select
0.79	91.4	Contig11498_at	Contig11498	-	-	2e+0	At5g07225	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.67	84.7	Contig13468_at	Contig13468	-	-	2e+0	At2g33850	unknown protein	S.X.	H.G.	Please select
0.63	80.3	Contig8153_at	Contig8153	-	-	5e-42	At3g09550	protein binding	S.X.	H.G.	Please select
0.61	78.7	Contig7040_at	Contig7040	-	-	6e-8	At3g54670	TTN8 (TITAN8)	S.X.	H.G.	Please select
0.61	78.7	Contig1223_at	Contig1223	aquaporin	-	6e-38	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	S.X.	H.G.	Please select
0.54	70.3	Contig10338_at	Contig10338	-	-	4e-2	At5g54900	ATRBP45A (RNA-binding protein 45A)	S.X.	H.G.	Please select
0.46	61.0	Contig13319_at	Contig13319	-	-	3e+0	At3g23172	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig3125_at	Contig3125	-	-	2e-15	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please select
0.44	58.9	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.7	99.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
17.1	99.6	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
11.6	99.3	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
10.5	99.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.4	99.0	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.2	99.0	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.6	98.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.3	98.1	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.1	98.0	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.85	0	710	HVSMEg0007D18r2_s_at	HVSMEg0007D18r2	-	-	4e+0	At2g07820	unknown protein	C.G.	S.X.	Please select
0.85	0	710	HVSMEg0007D18r2_at	HVSMEg0007D18r2	-	-	4e+0	At2g07820	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig4829_at	Contig4829	-	-	1e-14	At3g51240	F3H (FLAVANONE 3-HYDROXYLASE)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig9643_at	Contig9643	-	-	3e+0	At3g52630	-	C.G.	S.X.	Please select
0.01	2e+0	32	Contig2883_s_at	Contig2883	-	-	5e-15	At1g77840	eukaryotic translation initiation factor 5, putative / eIF-5, putative	C.G.	S.X.	Please select
0.01	2e+0	32	Contig1791_x_at	Contig1791	-	-	7e-165	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	C.G.	S.X.	Please select
0.02	8e+0	30	Contig7675_at	Contig7675	-	-	2e+0	At4g19840	ATPP2-A1	C.G.	S.X.	Please select
0.01	8e+0	30	Contig8247_at	Contig8247	-	-	2e-1	At1g10060	branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1)	C.G.	S.X.	Please select
0.01	8e+0	30	Contig7644_at	Contig7644	-	-	8e-1	At3g42310	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At1g45248	841094	-	-	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.42807.1.S1_at	CD407997	-	-	5e-13	At4g04180	AAA-type ATPase family protein	C.G.	S.X.	Please select
0.08	5e-29	129	Oryza sativa	Os02g0740300	AK067833.1	-	AAA ATPase, central region domain containingprotein	2e-11	At4g04180	AAA-type ATPase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	6e-3	42	Populus trichocarpa	PtpAffx.209638.1.S1_at	pmrna19037	hypothetical protein	-	4e-1	At5g37550	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e+0	32	Triticum aestivum	TaAffx.85919.1.S1_at	CA618423	-	-	4e+0	At4g18593	dual specificity protein phosphatase-related	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1615621_at	CF568864	-	-	4e+0	At3g44240	CCR4-NOT transcription complex protein, putative	C.G.	S.X.	Please select
0.02	7e+0	30	Zea mays	Zm.4847.1.A1_at	AI734484	-	-	2e+0	At2g36180	calmodulin-related protein, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage