Gene omics information

Query gene ID	Contig17412_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	58.9	Contig17412_at	Contig17412	-	-	2e+1	At4g28460	unknown protein	S.X.	H.G.	Please select
0.63	80.3	Contig10720_at	Contig10720	-	-	1e-39	At1g22620	ATSAC1 (suppressor of actin 1)	S.X.	H.G.	Please select
0.55	72.0	Contig13241_at	Contig13241	-	-	2e+0	At2g06570	unknown protein	S.X.	H.G.	Please select
0.50	66.9	EBro02_SQ006_L04_x_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	S.X.	H.G.	Please select
0.48	63.2	EBro02_SQ006_L04_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	S.X.	H.G.	Please select
0.48	63.2	Contig5004_at	Contig5004	-	-	9e-3	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	S.X.	H.G.	Please select
0.40	53.1	Contig1518_at	Contig1518	-	-	3e-2	At3g05950	germin-like protein, putative	S.X.	H.G.	Please select
0.37	47.9	Contig15855_at	Contig15855	-	-	2e+0	At1g48325	Expressed protein	S.X.	H.G.	Please select
0.31	38.6	Contig919_s_at	Contig919	-	-	5e+0	At1g30870	cationic peroxidase, putative	S.X.	H.G.	Please select
0.22	24.2	Contig15871_at	Contig15871	-	-	1e-7	At1g51040	phosphatidylinositol 4-kinase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.2	99.8	GSM281745	Genotype: Steptoe - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
20.4	99.7	GSM398275	Moroc9-75_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
17.3	99.6	GSM398283	Moroc9-75_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
16.7	99.6	GSM281746	Genotype: Steptoe - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
14.0	99.5	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.7	99.4	GSM68904	27 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study
12.0	99.3	GSM281747	Genotype: Steptoe - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
11.6	99.3	GSM68905	27 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
11.3	99.3	GSM281750	Genotype: Morex - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
10.7	99.2	GSM281749	Genotype: Morex - rep2	GSE11182	Steptoe x Morex seedling leaf comparison

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-2	40	EBro03_SQ006_M21_at	EBro03_SQ006_M21	-	-	9e-1	At5g67490	unknown protein	C.G.	S.X.	Please select
0.03	1e-2	40	Contig11825_at	Contig11825	-	-	1e+0	At5g25490	zinc finger (Ran-binding) family protein	C.G.	S.X.	Please select
0.04	4e-2	38	Contig8002_at	Contig8002	-	-	3e-7	At5g65207	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig5277_s_at	Contig5277	-	-	4e-2	At3g17160	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig23697_at	Contig23697	-	-	5e+0	At5g65220	ribosomal protein L29 family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig13689_at	Contig13689	-	-	6e+0	At1g48350	ribosomal protein L18 family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig8970_at	Contig8970	-	-	1e-2	At5g20560	beta-1,3-glucanase, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Contig5534_at	Contig5534	-	-	2e-10	At2g26670	TED4 (REVERSAL OF THE DET PHENOTYPE 4)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig5277_at	Contig5277	-	-	4e-2	At3g17160	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+1	30	Arabidopsis thaliana	At4g28460	828963	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	PsAffx.psHB025xH18f_at	PsAffx.psHB025xH18f	-	-	4e+0	At5g15008	unknown protein	C.G.	S.X.	Please select
0.35	5e-48	192	Oryza sativa	Os01g0198900	AK069974.1	-	Conserved hypothetical protein	1e-1	At2g35960	NHL12	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.223030.1.S1_at	pmrna40817	hypothetical protein	-	1e+0	At3g06780	glycine-rich protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e-1	36	Triticum aestivum	TaAffx.84882.1.S1_at	CA627506	-	-	1e+0	At2g46680	ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1607461_at	CD801250	hypothetical protein LOC100242032	-	2e-1	At1g62600	flavin-containing monooxygenase family protein / FMO family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.18984.1.A1_at	CO518220	hypothetical protein LOC100279220	-	2e+0	At3g13140	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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