Gene omics information

Query gene ID	Contig17311_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.52	68.3	Contig17311_at	Contig17311	-	-	4e-1	At3g20120	CYP705A21	S.X.	H.G.	Please select
0.40	53.1	Contig16878_at	Contig16878	-	-	6e-7	At2g37050	kinase	S.X.	H.G.	Please select
0.27	32.1	Contig4074_at	Contig4074	-	-	8e-7	At4g21570	unknown protein	S.X.	H.G.	Please select
0.22	24.2	Contig11968_at	Contig11968	-	-	3e-1	At2g37000	TCP family transcription factor, putative	S.X.	H.G.	Please select
0.21	22.6	Contig12503_at	Contig12503	-	-	7e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.21	22.6	Contig875_at	Contig875	-	-	2e-3	At3g05150	sugar transporter family protein	S.X.	H.G.	Please select
0.14	12.9	Contig19125_at	Contig19125	-	-	4e-3	At2g33980	atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22)	S.X.	H.G.	Please select
0.10	8.4	Contig15299_at	Contig15299	-	-	1e-1	At4g25010	nodulin MtN3 family protein	S.X.	H.G.	Please select
0.07	5.8	Contig6879_at	Contig6879	-	-	4e-24	At1g75330	OTC (ORNITHINE CARBAMOYLTRANSFERASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
57.6	100.0	GSM71142	OWB-R stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
39.3	99.9	GSM71143	OWB-R stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
33.9	99.9	GSM71144	OWB-R stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
23.0	99.8	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
22.9	99.8	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
20.6	99.7	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
16.4	99.6	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.3	99.4	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.1	99.2	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.2	99.0	GSM71154	Morex stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-8	57	Contig25340_at	Contig25340	-	-	8e-36	At1g31800	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	C.G.	S.X.	Please select
0.03	8e-7	54	Contig9283_at	Contig9283	-	-	1e-11	At5g16940	carbon-sulfur lyase	C.G.	S.X.	Please select
0.11	3e-6	52	EBpi01_SQ004_D06_s_at	EBpi01_SQ004_D06	-	-	6e+0	At1g54870	binding / catalytic/ oxidoreductase	C.G.	S.X.	Please select
0.04	3e-3	42	Contig20845_at	Contig20845	-	-	5e+0	At5g28360	ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE)	C.G.	S.X.	Please select
0.03	3e-3	42	Contig18407_at	Contig18407	-	-	2e+0	At3g50450	HR1 (HOMOLOG OF RPW8 1)	C.G.	S.X.	Please select
0.01	4e-2	38	Contig10161_at	Contig10161	-	-	3e-3	At1g19680	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.03	4e-2	38	Contig15561_s_at	Contig15561	-	-	5e+0	At5g38140	NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12)	C.G.	S.X.	Please select
0.02	4e-2	38	Contig15560_at	Contig15560	-	-	3e-3	At3g52970	CYP76G1	C.G.	S.X.	Please select
0.04	4e-2	38	HV05I05u_at	HV05I05u	-	-	1e+0	At5g09640	SCPL19	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	36	Arabidopsis thaliana	At3g20120	821555	CYP705A21	member of CYP705A	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-2	40	Glycine max	GmaAffx.73045.1.S1_at	BI425123	-	-	8e-1	At5g35920	CYP79A4P	C.G.	S.X.	Please select
0.14	1e-8	61	Oryza sativa	Os12g0512800	9640.m03197	-	Cytochrome P450 71E1 (EC 1.14.13.68)(4-hydroxyphenylacetaldehyde oxime monooxygenase)	3e+0	At5g49280	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	8e+0	32	Populus trichocarpa	PtpAffx.80069.1.S1_s_at	DN501927	cytochrome P450	-	1e-13	At3g19270	CYP707A4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.55	2e-76	286	Triticum aestivum	TaAffx.12442.1.A1_at	BJ263377	-	-	4e-3	At3g48310	CYP71A22	C.G.	S.X.	Please select
0.04	3e-5	48	Vitis vinifera	1622090_at	CD801504	hypothetical protein LOC100260385	-	1e+0	At5g40370	glutaredoxin, putative	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	Zm.7117.1.A1_a_at	AY104703.1	hypothetical protein LOC100273279 /// remorin	-	5e+0	At5g28630	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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