Gene omics information

Query gene ID	Contig17265_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.42	55.2	Contig17265_at	Contig17265	-	-	2e-13	At1g22800	methyltransferase	S.X.	H.G.	Please select
0.33	42.6	Contig3163_at	Contig3163	-	-	7e-1	At3g52540	OFP18 (OVATE FAMILY PROTEIN 18)	S.X.	H.G.	Please select
0.25	28.9	HV10L10u_at	HV10L10u	-	-	3e+0	At2g05520	GRP-3 (GLYCINE-RICH PROTEIN 3)	S.X.	H.G.	Please select
0.23	26.1	Contig25981_at	Contig25981	-	-	9e-8	At1g64350	SEH1H	S.X.	H.G.	Please select
0.17	16.9	Contig2742_at	Contig2742	-	-	2e+0	At3g27070	TOM20-1 (translocase outer membrane 20-1)	S.X.	H.G.	Please select
0.17	16.9	Contig5339_s_at	Contig5339	-	-	3e-2	At2g16015	unknown protein	S.X.	H.G.	Please select
0.13	11.6	Contig14880_at	Contig14880	-	-	3e+0	At5g52600	AtMYB82 (myb domain protein 82)	S.X.	H.G.	Please select
0.12	10.4	Contig11168_at	Contig11168	-	-	1e-15	At5g12480	CPK7 (calmodulin-domain protein kinase 7)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.2	99.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.9	98.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.9	98.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.0	97.2	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.7	96.9	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.6	96.8	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.9	95.8	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
3.9	95.8	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
3.9	95.8	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Contig26400_at	Contig26400	-	-	2e-5	At5g63040	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig18877_at	Contig18877	-	-	7e-6	At1g67890	protein kinase family protein	C.G.	S.X.	Please select
0.02	5e+0	32	Contig16925_at	Contig16925	-	-	2e-1	At1g49790	F-box family protein-related	C.G.	S.X.	Please select
0.01	5e+0	32	Contig4468_at	Contig4468	-	-	2e-5	At1g17370	UBP1B (oligouridylate binding protein 1B)	C.G.	S.X.	Please select
0.01	5e+0	32	Contig25812_at	Contig25812	-	-	6e-4	At1g74490	protein kinase, putative	C.G.	S.X.	Please select
0.01	5e+0	32	Contig9242_at	Contig9242	-	-	4e-18	At3g06430	EMB2750 (embryo defective 2750)	C.G.	S.X.	Please select
0.02	5e+0	32	HT08O11u_at	HT08O11u	-	-	1e+0	At4g02870	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	32	HT08K17u_at	HT08K17u	-	-	4e+0	At1g77880	F-box family protein	C.G.	S.X.	Please select
0.01	5e+0	32	Contig8724_at	Contig8724	-	-	7e-2	At1g02305	cathepsin B-like cysteine protease, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	2e-13	77	Arabidopsis thaliana	At1g22800	838886	methyltransferase	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	8e-1	36	Glycine max	GmaAffx.31353.1.S1_at	BM527349	-	-	5e-18	At2g01940	nucleic acid binding / transcription factor/ zinc ion binding	C.G.	S.X.	Please select
0.38	9e-125	448	Oryza sativa	Os12g0203100	CB676273	-	Conserved hypothetical protein	4e-1	At1g22800	methyltransferase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	5e-33	143	Populus trichocarpa	PtpAffx.54639.1.S1_at	DN494156	hypothetical protein	-	3e-64	At1g22800	methyltransferase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.55	0	874	Triticum aestivum	Ta.18763.1.S1_at	CN007864	-	-	2e+0	At2g18290	anaphase-promoting complex, subunit 10 family / APC10 family	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1616249_at	CB003047	-	-	5e-3	At1g48930	AtGH9C1 (Arabidopsis thaliana glycosyl hydrolase 9C1)	C.G.	S.X.	Please select
0.20	2e-54	212	Zea mays	Zm.1838.1.A1_at	CO526531	hypothetical protein LOC100276173	-	8e+0	At5g16010	3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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