Gene omics information

Query gene ID	Contig17124_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig17124_at	Contig17124	-	-	6e-1	At3g20180	metal ion binding	S.X.	H.G.	Please select
0.80	92.5	Contig16368_at	Contig16368	-	-	1e-40	At3g29320	glucan phosphorylase, putative	S.X.	H.G.	Please select
0.73	88.7	Contig5607_s_at	Contig5607	-	-	4e-1	At3g17160	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig12756_at	Contig12756	-	-	1e-21	At2g34090	MEE18 (maternal effect embryo arrest 18)	S.X.	H.G.	Please select
0.44	58.9	Contig25469_at	Contig25469	-	-	4e+0	At4g39200	40S ribosomal protein S25 (RPS25E)	S.X.	H.G.	Please select
0.22	24.2	HVSMEc0009P17f_s_at	HVSMEc0009P17f	-	-	1e-2	At3g10280	KCS14 (3-KETOACYL-COA SYNTHASE 14)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.6	99.4	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
11.9	99.3	GSM363464	5 mM B(OH)3 treatment (5B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
7.9	98.7	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.6	98.6	GSM398275	Moroc9-75_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.6	98.6	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.4	98.5	GSM398274	Moroc9-75_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.2	98.5	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.6	98.2	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.1	98.0	GSM398254	Martin_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.7	97.7	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	4e-16	83	HU11J14u_at	HU11J14u	-	-	4e+0	At5g19900	PRLI-interacting factor, putative	C.G.	S.X.	Please select
0.07	2e-11	67	Contig6720_at	Contig6720	-	-	6e-1	At5g08150	unknown protein	C.G.	S.X.	Please select
0.09	3e-10	63	HV_CEb0014M10r2_at	HV_CEb0014M10r2	-	-	3e-4	At2g01180	ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)	C.G.	S.X.	Please select
0.05	3e-10	63	Contig14137_at	Contig14137	-	-	2e-1	At5g66780	unknown protein	C.G.	S.X.	Please select
0.11	1e-9	61	Contig13559_at	Contig13559	-	-	7e-29	At4g08790	nitrilase, putative	C.G.	S.X.	Please select
0.22	2e-8	57	HF21P16r_at	HF21P16r	-	-	3e+0	At4g00420	double-stranded RNA-binding domain (DsRBD)-containing protein	C.G.	S.X.	Please select
0.42	2e-8	57	Contig19129_at	Contig19129	-	-	2e+0	At1g62250	unknown protein	C.G.	S.X.	Please select
0.09	2e-8	57	Contig14078_at	Contig14078	-	-	2e-21	At4g01800	preprotein translocase secA subunit, putative	C.G.	S.X.	Please select
0.07	2e-8	57	Contig6815_at	Contig6815	-	-	6e-11	At3g06170	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	6e-1	34	Arabidopsis thaliana	At3g20180	821562	metal ion binding	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-1	34	Glycine max	GmaAffx.3314.1.S1_at	BE211458	-	-	8e-1	At3g54210	ribosomal protein L17 family protein	C.G.	S.X.	Please select
0.05	8e-2	38	Oryza sativa	OsAffx.27363.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e-2	38	Populus trichocarpa	PtpAffx.207063.1.S1_at	pmrna14003	hypothetical protein	-	9e-1	At4g32290	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	8e-16	83	Triticum aestivum	Ta.8997.2.S1_at	CA628065	-	-	2e-1	At3g57950	unknown protein	C.G.	S.X.	Please select
0.07	8e-1	32	Vitis vinifera	1608483_at	CF203027.1	hypothetical protein LOC100263292	-	2e-11	At5g18400	unknown protein	C.G.	S.X.	Please select
0.05	3e-1	34	Zea mays	Zm.6166.3.S1_at	AI668497	Hypothetical protein LOC100193965	-	2e-6	At4g35000	APX3 (ASCORBATE PEROXIDASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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