Gene omics information

Query gene ID	Contig17054_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig17054_at	Contig17054	-	-	8e+0	At5g52110	HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208)	S.X.	H.G.	Please select
0.13	11.6	Contig9028_at	Contig9028	-	-	5e-45	At2g44680	CKB4 (CASEIN KINASE II BETA SUBUNIT 4)	S.X.	H.G.	Please select
0.05	4.1	HB03A08_T3_at	HB03A08_T3	-	-	4e+0	At3g46030	HTB11	S.X.	H.G.	Please select
0.01	1.1	Contig13162_at	Contig13162	-	-	1e-2	At5g21010	ATBPM5 (BTB-POZ and MATH domain 5)	S.X.	H.G.	Please select
0.01	1.1	Contig17086_at	Contig17086	-	-	6e+0	At5g53590	auxin-responsive family protein	S.X.	H.G.	Please select
0.00	0.2	Contig3836_at	Contig3836	-	-	9e-3	At1g27540	F-box family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.0	99.9	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
31.1	99.9	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
29.9	99.9	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
24.3	99.8	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
20.3	99.7	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
19.2	99.7	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
16.9	99.6	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
16.8	99.6	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
16.2	99.6	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
15.1	99.5	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	0	694	Contig9024_s_at	Contig9024	-	-	3e+0	At5g25310	catalytic	C.G.	S.X.	Please select
0.24	9e-60	230	Contig10957_at	Contig10957	-	-	7e+0	At5g10070	RNase L inhibitor protein-related	C.G.	S.X.	Please select
0.44	7e-42	171	Contig17862_at	Contig17862	-	-	1e+0	At5g10550	GTE2 (Global transcription factor group E 2)	C.G.	S.X.	Please select
0.14	2e-32	139	Contig13662_at	Contig13662	-	-	5e-3	At1g27840	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.12	6e-30	131	Contig13661_at	Contig13661	-	-	2e+0	At2g32885	-	C.G.	S.X.	Please select
0.09	5e-15	81	Contig24039_at	Contig24039	-	-	1e+0	At3g60600	VAP (VESICLE ASSOCIATED PROTEIN)	C.G.	S.X.	Please select
0.13	8e-14	77	EBro08_SQ007_M23_at	EBro08_SQ007_M23	-	-	5e+0	At3g01940	unknown protein	C.G.	S.X.	Please select
0.14	8e-14	77	Contig16591_at	Contig16591	-	-	1e+1	At4g05440	EDA35 (embryo sac development arrest 35)	C.G.	S.X.	Please select
0.08	2e-11	69	Contig26250_at	Contig26250	-	-	6e+0	At4g38210	ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e+0	32	Arabidopsis thaliana	At5g52110	835287	HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208)	F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;BPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-2	42	Glycine max	GmaAffx.12286.2.S1_at	BM108265	-	-	1e-11	At5g38510	rhomboid family protein	C.G.	S.X.	Please select
0.03	1e+0	36	Oryza sativa	Os10g0132200	9638.m00335	-	-	1e+0	At1g65845	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.139482.1.S1_at	CX182517	hypothetical protein	-	1e-37	At4g23010	UDP-galactose transporter-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	3e-12	73	Triticum aestivum	TaAffx.7664.1.S1_at	CA654269	-	-	4e+0	At3g61440	CYSC1 (CYSTEINE SYNTHASE C1)	C.G.	S.X.	Please select
0.03	7e-4	44	Vitis vinifera	1618174_at	CB001667	-	-	9e-2	At3g59730	receptor lectin kinase, putative	C.G.	S.X.	Please select
0.03	4e-3	42	Zea mays	Zm.6913.2.A1_a_at	AI065646	-	-	9e-1	At2g16060	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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