Gene omics information

Query gene ID	Contig17047_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.41	53.9	Contig17047_at	Contig17047	-	-	2e+0	At3g13440	methyltransferase/ nucleic acid binding	S.X.	H.G.	Please select
0.53	69.7	Contig13179_at	Contig13179	-	-	8e-6	At1g03750	SWI2 (SWITCH 2)	S.X.	H.G.	Please select
0.46	61.0	Contig9479_s_at	Contig9479	-	-	2e+0	At5g58470	TAF15b (TBP-ASSOCIATED FACTOR 15b)	S.X.	H.G.	Please select
0.44	58.9	Contig9088_at	Contig9088	-	-	1e+0	At5g46190	KH domain-containing protein	S.X.	H.G.	Please select
0.43	56.4	Contig1615_s_at	Contig1615	-	-	2e-103	At5g42020	BIP2	S.X.	H.G.	Please select
0.43	56.4	Contig7388_at	Contig7388	-	-	6e-5	At3g47960	proton-dependent oligopeptide transport (POT) family protein	S.X.	H.G.	Please select
0.31	38.6	basd0c03_s_at	basd0c03	-	-	3e+0	At3g16770	ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)	S.X.	H.G.	Please select
0.23	26.1	Contig15227_s_at	Contig15227	-	-	6e-1	At1g77350	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.7	99.4	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.3	99.4	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.1	99.3	GSM372971	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.1	99.2	GSM372972	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.9	99.2	GSM372973	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.8	99.2	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.0	99.1	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.6	99.0	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.5	99.0	GSM372949	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.4	98.8	GSM372966	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	7e-2	38	Contig6278_at	Contig6278	-	-	1e+0	At3g10040	transcription factor	C.G.	S.X.	Please select
0.01	3e-1	36	Contig8147_at	Contig8147	-	-	5e-18	At1g30330	ARF6 (AUXIN RESPONSE FACTOR 6)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig20084_at	Contig20084	-	-	3e+0	At2g43930	protein kinase family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig18633_at	Contig18633	-	-	1e+0	At5g55550	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig5266_at	Contig5266	-	-	2e-13	At5g19220	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig14185_at	Contig14185	-	-	9e-1	At5g62070	IQD23 (IQ-domain 23)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig819_at	Contig819	-	-	3e+0	At5g37770	TCH2 (TOUCH 2)	C.G.	S.X.	Please select
0.02	4e+0	32	Contig3371_at	Contig3371	-	-	6e-7	At1g62710	BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please select
0.02	4e+0	32	Contig11229_at	Contig11229	-	-	2e-4	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At3g13440	820545	methyltransferase/ nucleic acid binding	F:methyltransferase activity, nucleic acid binding;P:methylation, acetate biosynthetic process from carbon monoxide, methanol oxidation;C:cellular_component unknown;BOMAFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	8e-1	36	Glycine max	Gma.17277.1.A1_at	AW310866	-	-	2e-1	At1g63855	unknown protein	C.G.	S.X.	Please select
0.14	3e-35	151	Oryza sativa	Os01g0335700	AK068195.1	-	Disease resistance protein family protein	1e+0	At5g45680	FK506-binding protein 1 (FKBP13)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.222649.1.S1_at	pmrna40195	hypothetical protein	-	7e-2	At1g76220	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.45	1e-76	287	Triticum aestivum	TaAffx.43336.1.S1_at	BQ801387	-	-	3e+0	At5g64395	unknown protein	C.G.	S.X.	Please select
0.02	4e-2	38	Vitis vinifera	1620337_at	CF213940	similar to ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5); calmodulin binding / cyclic nucleotide binding / potassium channel	-	2e-5	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	C.G.	S.X.	Please select
0.02	6e-2	38	Zea mays	Zm.5083.4.A1_x_at	AI600767	-	-	3e-17	At3g44110	ATJ3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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