Gene omics information

Query gene ID	Contig17036_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.3	Contig17036_at	Contig17036	-	-	4e-7	At3g27720	zinc finger protein-related	S.X.	H.G.	Please select
0.71	87.1	Contig7886_at	Contig7886	-	-	8e+0	At5g39790	5'-AMP-activated protein kinase beta-1 subunit-related	S.X.	H.G.	Please select
0.56	74.3	Contig5960_at	Contig5960	-	-	1e-16	At3g18880	ribosomal protein S17 family protein	S.X.	H.G.	Please select
0.43	56.4	Contig8742_at	Contig8742	-	-	1e-6	At3g61600	ATPOB1	S.X.	H.G.	Please select
0.31	38.6	Contig6981_at	Contig6981	-	-	4e-5	At4g00170	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please select
0.29	35.5	Contig1445_at	Contig1445	-	-	5e-3	At3g49390	CID10	S.X.	H.G.	Please select
0.27	32.1	Contig10592_at	Contig10592	-	-	1e-2	At5g26180	NOL1/NOP2/sun family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.5	99.3	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.88	0	1041	HU02E04u_s_at	HU02E04u	-	-	8e-5	At3g27720	zinc finger protein-related	C.G.	S.X.	Please select
0.01	7e-1	34	Contig10031_at	Contig10031	-	-	1e-2	At2g13540	ABH1 (ABA HYPERSENSITIVE 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig10793_at	Contig10793	-	-	6e-17	At3g54460	SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein	C.G.	S.X.	Please select
0.03	3e+0	32	Contig12561_at	Contig12561	-	-	1e+0	At5g53720	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig23805_at	Contig23805	-	-	2e+0	At2g30560	glycine-rich protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig11565_at	Contig11565	-	-	2e+0	At5g26770	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig9781_at	Contig9781	-	-	1e-7	At1g71790	F-actin capping protein beta subunit family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig8415_at	Contig8415	-	-	2e-5	At2g33510	protein binding	C.G.	S.X.	Please select
0.02	3e+0	32	Contig7554_s_at	Contig7554	-	-	2e-9	At2g31440	protein binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-7	56	Arabidopsis thaliana	At3g27720	822394	zinc finger protein-related	F:zinc ion binding;P:unknown;C:unknown;MOFPVBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.66754.1.S1_at	BE330541	-	-	1e+1	At5g13470	unknown protein	C.G.	S.X.	Please select
0.24	3e-74	280	Oryza sativa	Os.26893.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Populus trichocarpa	PtpAffx.46129.1.S1_at	CV230659	hypothetical protein	-	4e+0	At2g38646	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.75	4e-152	537	Triticum aestivum	Ta.12356.1.S1_at	BQ172178	-	-	1e-1	At2g17920	nucleic acid binding / zinc ion binding	C.G.	S.X.	Please select
0.07	6e-3	40	Vitis vinifera	1612072_at	CD712676	-	-	3e-14	At2g16090	zinc finger protein-related	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.1142.1.A1_at	CK827212	Hypothetical protein LOC100216781	-	4e+0	At5g56520	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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