Gene omics information

Query gene ID	Contig16972_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	95.2	Contig16972_at	Contig16972	-	-	5e-10	At5g64813	LIP1 (Light Insensitive Period1)	S.X.	H.G.	Please select
0.81	92.8	Contig18703_at	Contig18703	-	-	1e+0	At5g48205	zinc ion binding	S.X.	H.G.	Please select
0.77	90.8	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	S.X.	H.G.	Please select
0.77	90.8	HS18F06u_s_at	HS18F06u	-	-	7e-14	At2g47610	60S ribosomal protein L7A (RPL7aA)	S.X.	H.G.	Please select
0.77	90.8	HM01F24T_s_at	HM01F24T	-	-	4e-5	At2g33370	60S ribosomal protein L23 (RPL23B)	S.X.	H.G.	Please select
0.75	89.5	Contig10241_at	Contig10241	-	-	2e-9	At1g29120	unknown protein	S.X.	H.G.	Please select
0.74	89.1	Contig7221_s_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.68	85.1	Contig14763_at	Contig14763	-	-	2e-1	At2g37510	RNA-binding protein, putative	S.X.	H.G.	Please select
0.68	85.1	Contig23732_at	Contig23732	-	-	6e-1	At1g05190	emb2394 (embryo defective 2394)	S.X.	H.G.	Please select
0.67	84.7	HY09M22u_s_at	HY09M22u	-	-	3e+0	At2g04378	beta-galactosidase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.0	97.2	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.0	96.0	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.8	95.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.4	94.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM160831	7% SWC rep1	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-2	38	Contig18387_at	Contig18387	-	-	1e+0	At2g46650	CB5-C (CYTOCHROME B5 ISOFORM C)	C.G.	S.X.	Please select
0.01	9e-1	34	Contig4225_at	Contig4225	-	-	7e-4	At5g54430	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.01	9e-1	34	Contig7115_at	Contig7115	-	-	9e-1	At5g51100	FSD2 (FE SUPEROXIDE DISMUTASE 2)	C.G.	S.X.	Please select
0.02	4e+0	32	Contig21456_at	Contig21456	-	-	1e-1	At5g13700	ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1)	C.G.	S.X.	Please select
0.02	4e+0	32	Contig16573_at	Contig16573	-	-	3e-2	At3g56610	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig2820_at	Contig2820	-	-	2e-7	At1g79920	ATP binding	C.G.	S.X.	Please select
0.01	4e+0	32	Contig11496_at	Contig11496	-	-	5e-11	At1g23280	MAK16 protein-related	C.G.	S.X.	Please select
0.02	4e+0	32	Contig5696_s_at	Contig5696	-	-	7e-3	At5g48335	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Contig5696_at	Contig5696	-	-	7e-3	At5g48335	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	5e-10	65	Arabidopsis thaliana	At5g64813	836603	LIP1 (Light Insensitive Period1)	The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	2e-13	77	Glycine max	Gma.5748.1.S1_at	BU761120	-	-	1e-63	At5g64813	LIP1 (Light Insensitive Period1)	C.G.	S.X.	Please select
0.32	1e-147	523	Oryza sativa	Os.46527.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.216110.1.S1_at	pmrna30693	hypothetical protein	-	2e+0	At5g46970	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.85	0	884	Triticum aestivum	Ta.3952.1.S1_at	BJ261220	-	-	3e-8	At5g64813	LIP1 (Light Insensitive Period1)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1613995_at	CB341658	hypothetical protein LOC100249137	-	1e+0	At4g14695	unknown protein	C.G.	S.X.	Please select
0.03	8e-1	34	Zea mays	Zm.14948.1.A1_at	CO523021	hypothetical protein LOC100277070	-	6e+0	At3g55250	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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