Gene omics information

Query gene ID	Contig1695_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig1695_at	Contig1695	-	-	7e-21	At5g46430	60S ribosomal protein L32 (RPL32B)	S.X.	H.G.	Please select
0.67	84.7	Contig20989_at	Contig20989	-	-	1e-1	At5g47330	palmitoyl protein thioesterase family protein	S.X.	H.G.	Please select
0.57	74.9	HK04G23r_s_at	HK04G23r	-	-	1e+1	At5g57280	methyltransferase	S.X.	H.G.	Please select
0.50	66.9	rbags23g17_s_at	rbags23g17	-	-	3e-1	At3g46410	protein kinase family protein	S.X.	H.G.	Please select
0.50	66.9	Contig15199_at	Contig15199	-	-	4e+0	At2g40150	-	S.X.	H.G.	Please select
0.48	63.2	Contig18410_s_at	Contig18410	-	-	3e+0	At4g09649	unknown protein	S.X.	H.G.	Please select
0.43	56.4	HK05B20r_s_at	HK05B20r	-	-	1e+0	At1g27000	bZIP family transcription factor	S.X.	H.G.	Please select
0.36	47.1	Contig4561_at	Contig4561	-	-	2e-69	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.7	98.6	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.0	96.0	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.0	96.0	GSM372989	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8	95.7	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7	95.5	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	0	634	Contig1694_s_at	Contig1694	-	-	1e-22	At5g46430	60S ribosomal protein L32 (RPL32B)	C.G.	S.X.	Please select
0.53	7e-149	525	Contig1696_at	Contig1696	-	-	5e-28	At4g18100	60S ribosomal protein L32 (RPL32A)	C.G.	S.X.	Please select
0.74	3e-148	523	Contig1697_s_at	Contig1697	-	-	1e-6	At5g46430	60S ribosomal protein L32 (RPL32B)	C.G.	S.X.	Please select
0.15	2e-19	95	HA10M09u_x_at	HA10M09u	-	-	1e+1	At5g42235	Expressed protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig9273_at	Contig9273	-	-	8e-1	At2g37470	histone H2B, putative	C.G.	S.X.	Please select
0.01	7e-1	34	Contig7098_at	Contig7098	-	-	1e-2	At1g56360	PAP6 (PURPLE ACID PHOSPHATASE 6)	C.G.	S.X.	Please select
0.01	7e-1	34	Contig14514_at	Contig14514	-	-	2e-1	At1g52320	unknown protein	C.G.	S.X.	Please select
0.01	7e-1	34	Contig3181_at	Contig3181	-	-	4e-16	At5g67030	ABA1 (ABA DEFICIENT 1)	C.G.	S.X.	Please select
0.03	7e-1	34	Contig7097_s_at	Contig7097	-	-	4e+0	At4g32280	IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	7e-21	101	Arabidopsis thaliana	At5g46430	834686	60S ribosomal protein L32 (RPL32B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	1e-23	111	Glycine max	GmaAffx.90742.1.S1_at	CF806467	-	-	2e-14	At5g46430	60S ribosomal protein L32 (RPL32B)	C.G.	S.X.	Please select
0.49	2e-109	397	Oryza sativa	OsAffx.30120.3.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.32	7e-25	115	Populus trichocarpa	PtpAffx.6016.1.S1_at	CV250853	hypothetical protein	-	2e-42	At4g18100	60S ribosomal protein L32 (RPL32A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.63	0	934	Triticum aestivum	Ta.28306.2.S1_at	BJ226490	-	-	1e-20	At5g46430	60S ribosomal protein L32 (RPL32B)	C.G.	S.X.	Please select
0.36	1e-25	115	Vitis vinifera	1616525_s_at	CF200762.1	hypothetical protein LOC100243581	-	1e-15	At5g46430	60S ribosomal protein L32 (RPL32B)	C.G.	S.X.	Please select
0.47	4e-116	416	Zea mays	Zm.14412.3.A1_at	CF637876	hypothetical protein LOC100193699	-	7e-12	At5g46430	60S ribosomal protein L32 (RPL32B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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