CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig16886_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.48 63.2 Contig16886_at Contig16886 - - 5e+0 At5g60460 sec61beta family protein S.X. H.G.
0.67 84.7 Contig11673_at Contig11673 - - 7e-8 At2g35720 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
0.67 84.7 Contig26395_at Contig26395 - - 5e+0 At5g07460 PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2) S.X. H.G.
0.63 80.3 Contig16455_at Contig16455 - - 1e-1 At3g46880 unknown protein S.X. H.G.
0.63 80.3 Contig841_x_at Contig841 - - 1e-35 At2g34420 LHB1B2 S.X. H.G.
0.46 61.0 Contig11731_at Contig11731 - - 2e-10 At3g02450 cell division protein ftsH, putative S.X. H.G.
0.46 61.0 Contig18744_at Contig18744 - - 2e+0 At5g41630 F-box family protein S.X. H.G.
0.44 58.9 Contig15463_at Contig15463 - - 5e+0 At5g11930 glutaredoxin family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
163.6 100.0 GSM261053 Bonus Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
89.9 100.0 GSM311261 kara_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
51.1 99.9 GSM311260 kara_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
36.3 99.9 GSM311259 kara_with_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
34.4 99.9 GSM261054 Bonus Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0 96.0 GSM261055 Bonus Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5 95.1 GSM261076 Albina e-16 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5 95.1 GSM282024 Malting_day4_Merit_rep2 GSE11200 Expression data from malting barley seeds
1.8 87.4 GSM282022 Malting_day4_Merit_rep4 GSE11200 Expression data from malting barley seeds
1.5 84.4 GSM311265 kara_without_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-3 42 Contig13815_at Contig13815 - - 2e+0 At5g50130 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.03 6e-1 34 HZ49F08r_at HZ49F08r - - 4e+0 At4g00893 - C.G. S.X.
0.02 6e-1 34 Contig10638_s_at Contig10638 - - 5e-1 At2g20921 unknown protein C.G. S.X.
0.04 6e-1 34 baal21h16_s_at baal21h16 - - 4e-6 At4g38230 CPK26 C.G. S.X.
0.03 6e-1 34 Contig3452_at Contig3452 - - 1e-1 At1g11700 unknown protein C.G. S.X.
0.01 6e-1 34 Contig2465_at Contig2465 - - 1e-135 At1g20260 hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism C.G. S.X.
0.03 6e-1 34 HI05D24u_at HI05D24u - - 5e+0 At3g47470 LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4) C.G. S.X.
0.04 6e-1 34 baal21h16_at baal21h16 - - 4e-6 At4g38230 CPK26 C.G. S.X.
0.03 6e-1 34 Contig12329_at Contig12329 - - 8e+0 At5g14010 zinc finger (C2H2 type) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e+0 32 Arabidopsis thaliana At5g60460 836167 sec61beta family protein F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB - - - C.G. S.X.
0.04 2e+0 34 Glycine max GmaAffx.612.1.S1_s_at BE583724 - - 3e+0 At5g03230 unknown protein C.G. S.X.
0.04 6e-1 36 Oryza sativa OsAffx.18934.1.S1_x_at - - - 0 C.G. S.X.
0.03 1e-1 38 Populus trichocarpa PtpAffx.200674.1.S1_at pmrna1313 - - 2e+1 At3g49390 CID10 C.G. S.X.
0.29 4e-31 135 Triticum aestivum Ta.23324.1.S1_at CA681101 - - 2e+1 At5g46730 glycine-rich protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1618889_at CB981513 - - 2e-1 At4g08230 glycine-rich protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.15201.1.A1_at BM348856 - - 3e-1 At4g33660 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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