Gene omics information

Query gene ID	Contig16821_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	Contig16821_at	Contig16821	-	-	4e+0	Atmg00280	-	S.X.	H.G.	Please select
0.83	94.0	EBan01_SQ003_M14_at	EBan01_SQ003_M14	-	-	9e+0	At4g16980	arabinogalactan-protein family	S.X.	H.G.	Please select
0.73	88.7	Contig19539_at	Contig19539	-	-	2e-1	At4g11385	unknown protein	S.X.	H.G.	Please select
0.60	77.3	HVSMEn0004H06r2_at	HVSMEn0004H06r2	-	-	4e-16	At2g18390	TTN5 (TITAN 5)	S.X.	H.G.	Please select
0.57	74.9	Contig12885_at	Contig12885	-	-	4e-12	At3g48620	-	S.X.	H.G.	Please select
0.55	72.0	Contig22415_at	Contig22415	-	-	2e+0	At4g26290	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.4	99.2	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
10.4	99.2	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
8.9	98.9	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.9	98.9	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
8.4	98.8	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
8.0	98.7	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.0	98.7	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.8	98.6	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
7.3	98.5	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.8	98.3	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-6	52	Contig10030_at	Contig10030	-	-	1e-2	At1g09390	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.04	2e-3	42	Contig18246_at	Contig18246	-	-	2e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	C.G.	S.X.	Please select
0.05	2e-3	42	HV_CEb0017D17f_at	HV_CEb0017D17f	-	-	4e+0	At4g30660	hydrophobic protein, putative / low temperature and salt responsive protein, putative	C.G.	S.X.	Please select
0.06	8e-3	40	Contig20663_at	Contig20663	-	-	5e-1	Atmg01310	-	C.G.	S.X.	Please select
0.03	3e-2	38	Contig9541_at	Contig9541	-	-	4e-4	At4g08520	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.03	3e-2	38	Contig7253_at	Contig7253	-	-	2e-1	At1g28650	lipase, putative	C.G.	S.X.	Please select
0.02	3e-2	38	Contig1402_at	Contig1402	-	-	7e-1	At3g26430	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.04	5e-1	34	HW08F21u_at	HW08F21u	-	-	1e+0	At4g19140	unknown protein	C.G.	S.X.	Please select
0.04	5e-1	34	Contig13408_at	Contig13408	-	-	3e-1	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	Atmg00280	-	-	hypothetical protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	5e+0	32	Glycine max	PsAffx.C49000043_at	PsAffx.C49000043	-	-	6e-1	At1g20030	pathogenesis-related thaumatin family protein	C.G.	S.X.	Please select
0.11	7e-28	125	Oryza sativa	Os01g0329900	AK120056.1	-	Lipolytic enzyme, G-D-S-L family protein	2e-2	At1g09390	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	5e+0	32	Populus trichocarpa	PtpAffx.213507.1.S1_at	pmrna26405	hypothetical protein	-	5e+0	At5g53110	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.83	2e-128	458	Triticum aestivum	Ta.8094.1.A1_at	CD454907	-	-	1e+0	At2g41430	ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15)	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1615896_at	CF405900	-	-	2e+0	At2g14095	unknown protein	C.G.	S.X.	Please select
0.06	1e-1	36	Zea mays	Zm.6997.1.A1_at	BG874061	hypothetical protein LOC100191527	-	2e+0	At5g03980	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage