Gene omics information

Query gene ID Contig167_x_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6784.7Contig167_x_atContig167--2e-8At1g08880H2AXAS.X.H.G.
0.5066.9Contig11372_atContig11372--5e-7At3g27100-S.X.H.G.
0.5066.9Contig14154_atContig14154--2e+0At1g60320Toll-Interleukin-Resistance (TIR) domain-containing proteinS.X.H.G.
0.4356.4Contig10954_atContig10954--4e+0At3g21175ZML1 (ZIM-LIKE 1)S.X.H.G.
0.4053.1Contig13788_atContig13788--3e+0At3g18215unknown proteinS.X.H.G.
0.3545.1Contig416_x_atContig416--5e-29At4g24190SHD (SHEPHERD)S.X.H.G.
0.3342.6Contig12594_atContig12594--3e+0At5g11990proline-rich family proteinS.X.H.G.
0.2732.1Contig15165_s_atContig15165--2e+0At3g28460unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
19.599.7GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seeds
18.899.7GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signaling
13.999.5GSM282028Malting_day1_Merit_rep1GSE11200Expression data from malting barley seeds
12.799.4GSM282029Malting_day1_Merit_rep3GSE11200Expression data from malting barley seeds
12.199.3GSM282021Malting_day4_Legacy_rep 2GSE11200Expression data from malting barley seeds
11.599.3GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
10.699.2GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.999.1GSM282039Malting_day4_Morex_rep2GSE11200Expression data from malting barley seeds
9.899.1GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seeds
9.499.0GSM282027Malting_day1_Legacy_rep2GSE11200Expression data from malting barley seeds
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.9501080Contig145_x_atContig145--4e-10At1g08880H2AXAC.G.S.X.
0.9501080Contig145_atContig145--4e-10At1g08880H2AXAC.G.S.X.
0.860848Contig571_atContig571--8e-2At4g27230HTA2 (histone H2A)C.G.S.X.
0.730745Contig440_s_atContig440--4e-10At1g08880H2AXAC.G.S.X.
0.770732Contig443_atContig443--2e-8At4g27230HTA2 (histone H2A)C.G.S.X.
0.680724Contig137_x_atContig137--1e-6At1g08880H2AXAC.G.S.X.
0.610722Contig85_x_atContig85--2e-6At1g08880H2AXAC.G.S.X.
0.640714Contig671_atContig671--2e-5At1g08880H2AXAC.G.S.X.
0.640710Contig158_s_atContig158--2e-5At1g08880H2AXAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.132e-859Arabidopsis thalianaAt1g08880837409H2AXAEncodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.---C.G.S.X.
0.392e-22107Glycine maxPsAffx.C4000035_atPsAffx.C4000035--4e+0At5g59870HTA6C.G.S.X.
0.412e-99363Oryza sativaOs03g0279200CA753594-Histone H2A1e-7At5g02560HTA12C.G.S.X.
0.061e-448Populus trichocarpaPtp.6807.1.S1_atDN499732histone 2-6e-27At1g08880H2AXAC.G.S.X.
0.710712Triticum aestivumTa.29542.1.S1_x_atD38087.1protein H2A-1e-10At1g08880H2AXAC.G.S.X.
0.213e-1787Vitis vinifera1608056_atCF511408hypothetical protein LOC100254490-4e-31At1g08880H2AXAC.G.S.X.
0.446e-112402Zea maysZm.14706.1.S1_atAY103710.1--2e-3At4g27230HTA2 (histone H2A)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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